WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: Y32H12A.8 [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = Y32H12A.8 (Len=3849) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (Y32H12A.8, Len=3849): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEPDPNNVFKKPSPEILFAEYGRSSTEGEDPTPENKRVIDLYDPVDAMSLNREKDRVVVSGIRGVLQIIKIQNSTNDLI 80
WD40-rpts (_____________WD 1____________) (_______
Query 81 EGPSIVKDLDMRVYRKGKVNILYSAQNVKWNQLYDQYIATTSSNGSIVCWNISRRNKSVFKSHERSATCLDWHATTPYIL 160
WD40-rpts ____________________WD 2__________________________)(__________________WD 3______
Query 161 VSGSRDCTVKSYDMRVKDNHQLTFSDRNCESIRDVAMCKAPGFDDYFFTGDDGGVLRLWDLRQTRRWVFQKVAHRSFVST 240
WD40-rpts ____________) (__________________WD 4__________________) (_______________
Query 241 LSLNPHNRTLIATGGGRDKMVKIWEWTGPELNRISVVETTAPLGRVAWRPDRPYHLATCASVNETSVHVWDVRRPYLPYV 320
WD40-rpts ___WD 5_________________)(____________________WD 6____________________)(________
Query 321 TYDEHRDSVTDACWPSTDFDVFMTCGKDGLVVLHNIDSGHAPISFACDVAFDITPDGTMGLAVNSEIHAKNDADLEAKMC 400
WD40-rpts ___________WD 7___________________)(_________________WD 8________________)
Query 401 GPKSKKAIRQIPYESFFKPIKSLVSFGVPESLTHSLPPTTFYKIAEKYLIGGVEIMQLCETNSKVARKNGLEHVAQTWRL 480
WD40-rpts
Query 481 VEALCEQAHIQEEYDRLSAEEKERVIRAWVVRKKELAEEGRRWLANLNDHYRDDVKKQVTQRLENTQHVTAFLKFSSSSE 560
WD40-rpts
Query 561 SEEGSDNEKIGDGDNDRREIDKMAPDVNRNTAKKKKKKKKAIAATDFYFGAGEANFKGGKQEILHYNEFMGLRDEAYELR 640
WD40-rpts
Query 641 DEEKERRFFCKAKKQPTNDEEYEELHRELNDTEADFQAWSPMLEIYRLLLYHAEQGDMQTCAAISMVCGKRLLDAVDPYT 720
WD40-rpts
Query 721 VNGWIQCYMEMLHRLELFLVCAKIRKYCPLDSISSVSRENTTIQLAHADCDALIVNGRCTKCEALAQADCTVCRFGIVGM 800
WD40-rpts
Query 801 TFQCNVCGHCMHTDHAYQWFQKTKECAFVGCPCTCGQNTWPDMERTFIGNDEIRKGHRKFNHLEQTEPTTNRVDASRLDT 880
WD40-rpts
Query 881 DSEESPEEDIEWSTATKLIRDKFGEVPCDDWDTPWAKHLVDIYKERLRKPGDFVPKRILALTEPPVASEDDGEEEDPAAF 960
WD40-rpts
Query 961 SSKEIAEAEVRDSLFSQLQDVITEQHDNIKGTSEDEVEDREDEDRTDLVKYYLNPPPPPKNEVRVQEEQLEGSRKRKLEQ 1040
WD40-rpts
Query 1041 IQEEDEDEEILDEEEELFEEEEEVDEEYEGEVEEVHRESSEELDDEEEEEEVMPEEEIEEDQEDEQESVLDESEEDKDEP 1120
WD40-rpts
Query 1121 WDENLFGDNYIKSIGPIGLQWDLKLENERVTSPTFLSAVVKEHLMDVKRFTFAGSSDEEHQEAEEEEQEESRKVDERALL 1200
WD40-rpts
Query 1201 NATPEKPTEREGEVLKAPAQLTYAQKALMILGMSRSELKKKKARKQNKQLAELARKMTTEKKSFYSIDVSSDEFHVSSLS 1280
WD40-rpts
Query 1281 DDSFSKSTRSSSSSSSSSEFFVPRAAALEVSETKICEGYNPEIERSLSADEEEESTSHDELSAQPELRLPTPHATGDLYL 1360
WD40-rpts
Query 1361 KRDSPSPEIVHKMKKFKKVSSSMVYSSSGGEEHQQQCTINGYAEAICICIEGAVPSPPPSSSRFSTPPVSPVSSCPSSRF 1440
WD40-rpts
Query 1441 SSPSATRPQSPDPVPAAPAENCDLPPPPPEPPLPGEDTPSRKSSSSSAPLPEAPIVVEPPIITSYANPIFTRITGRPPRS 1520
WD40-rpts
Query 1521 RPVTISGDGYDLAPITNGDCAPSAANLLFECSSLPEKPVEKVLLVNGHGSTQLISKLNDTRDHILVIDLPGSQTSQQRQR 1600
WD40-rpts
Query 1601 NLSVGSELFGSLNNEQTPNDMKLMQKCPPMDSDMFSSEEDLFESCQEDLNVPFFPETEDVPIIPGTRHPWETDQVYQQRL 1680
WD40-rpts
Query 1681 QAERAEDEAAHVVPVSEEKEKAEEVEDPIVPPVEFNKHTPMMRELAKRRRKLKLQYPKPLQPLKRVKFTEQDYDTSMKAA 1760
WD40-rpts
Query 1761 LENLKLEAPEMSSESDFEDFVREQEVCRKCKHQVKRDKMEKQYANWLRNVTDEGQMFFAKSLSDPCAKFQLSHLDSYRTD 1840
WD40-rpts
Query 1841 AEKARKTAVHLLEFIKVFYFIKWEELLGPDREFVLKEVYELWEDYREKRPRICRLHFKDYQFRFFASSIATKMKEEMLRG 1920
WD40-rpts
Query 1921 ESPQLRQSLLNYDWLHIKPCVTTIDDDPHAMDEMLDTIVLRNPNWSIEEKKAANRYWDLFGKIPLHIESSTAVVVPPLSE 2000
WD40-rpts
Query 2001 DQLEIIDESNYWTKKQMKQVLCRKRNYDIRLGYTRQKKNNGDLFRVQDRSRKVVNREWQMRLEKMVNETRRVDFSTSSFR 2080
WD40-rpts
Query 2081 VNPHEKLIYTSDEHHPWPVCQFDNGDHYVTVQPMASKRYIEFKSRIRSKFHFRRQSSLIDNSKDVEITTEKLRKLPSFKK 2160
WD40-rpts
Query 2161 FEPRLQKATDFKEMVSKHFKVLDRAIVKSRYELYTIMEEDDEVELIVNMLENRTVKHGKRRLDAEDIFAERRSQRERKER 2240
WD40-rpts
Query 2241 EAYGRMTGAKYRRELANTEKQEIEKMKIMNKHWMPALRKKIRIARKVIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKKS 2320
WD40-rpts
Query 2321 LVTKKDLKYSAPVVWRDAIYQLDYKEPTIIPPYVKPLTKLNEYHYKELPIYNSSSDDEDYDPDDDRPSDDSFIQFETQPD 2400
WD40-rpts
Query 2401 LPAVAASLQNEIRENLELADEQADEQWEYSDDSSVSTWFNDGTDDILNRLINSDYLEEHMILKERARGALGWKLCNVLKE 2480
WD40-rpts
Query 2481 REPLDSESDEEENESFEYMVQTDLQKQIDAEDQWMEENAVLQDVGITDGKRTKQLAKLEHDQDMKRMERREDHQKEAQQV 2560
WD40-rpts
Query 2561 RWFLKKFALDHSYMTEPYTWHEDLHSAISSLHRSELRRVSNRVHLIMKSEYEELAEHDEMIADIIPRDETSIQYKMINFL 2640
WD40-rpts
Query 2641 LFRSNGESFEESSRRADECRDMIKPVQQYELFFGREGTYTLNMVQKEVMMMKNIRASFNYLIRRLGTNEGMPEDSVRKFM 2720
WD40-rpts
Query 2721 KLWWYNSRDTLERFITCCEETVETEEMIMDDMMDLYYTPGNLEIARDTFDKLEIASIMNEILYTVDQYVEETEILFRGAS 2800
WD40-rpts
Query 2801 TAADRQAFAVMSIWEWNELKHGYPEWREPAAVSSEDPELISSESSCLSESDDPSVHSSQVSCGEESEELPESPEKSPIKI 2880
WD40-rpts
Query 2881 PRRISELDENDESRRNSLRKGSPNKQMMKYYSEVYESLKAVEAQRRDKKAEEAARRCMDRWEVIEREQRWEIEDKERKIH 2960
WD40-rpts
Query 2961 DYLMMEQAVMEKFGEEQEKKENLKNWKEILKNPEAESTQLEDCMMYGRSGIPTAEVLEMMGIPLSLDRDMFYMEMYECQS 3040
WD40-rpts
Query 3041 AATSVSDADELRELIEKDFKEEDLEIDGTDMDDDAVSYSSVKHVFKHELYFQRDLESRRVPSGILIFTPEQFFEDELDSK 3120
WD40-rpts
Query 3121 LEYEKWRRIIEASECPFTFNTLVMRERLLGKCREAFKQYLLDRYLYPEEHRNSVVLEIFKNCFVIVVVDTHLEPWDCRVV 3200
WD40-rpts
Query 3201 SRDDVTKAVADRASWLRQWMVQDSQERMIQWMTSHKIDMEVYASCPVLSVRGGDLTHEHIEQMSRMFIEESTREEWLSIK 3280
WD40-rpts
Query 3281 RHEGVQALDVCVNSSRNMKIIGFFTIILQTIIRMPPPPSSKINAYKLIFKPIYDAWYHLWKFENQQSNSKTIIARKFDPV 3360
WD40-rpts
Query 3361 KEYLHKARMIVNYAHQHYRMKRFDSLMSKDPTEFQLVDRSDVPSASLFDSLDAAVSKFCNEDSRKSLFLENAFFKFTNGY 3440
WD40-rpts
Query 3441 SIQYYSKFLSFSLKINISAHLAEDQKQVVKDTLIQLATGKIPYFTTNYFGGYDYTENISLTEEDEENDDDKSPVLRNTDI 3520
WD40-rpts
Query 3521 VQPAAPNAKYLEMEDCEEEIEWLRSMHEGSDFHRRRFMAVLMYKMAQKAIFRFAPHLADFERGRKRFQHLLTLHAKQRPL 3600
WD40-rpts
Query 3601 LDMMITKVRGTYFMPLETNMFLYDSKLITFAELVDSEVHPKEWKERKETFEEIRRQTPKDPKSMSRFLNMHNSGSDSDSG 3680
WD40-rpts
Query 3681 SEVRSDSSSSLGGSTESLNSSKKGKRARRAMNKAQRELMLLKLRSKPVNPEETFALEKRAIGAKKWKVRRKINEMLEGIA 3760
WD40-rpts
Query 3761 DLDKFKIEAKLPAKKKDLLKHINELIVENSDTAHWSWGDLKMQTRIRKIPPANRMKPKHINRILKGKKMYKPPKKYDPKD 3840
WD40-rpts
Query 3841 AQTNGRKWF 3849
WD40-rpts
 8 WD40-repeats found in QUERY=Y32H12A.8 (Len=3849): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 41-71 3.81 272.06 0.01335 12.5% 39.43 WD 2: Seg 5 73-131 3.38 254.13 0.02317 15.0% 37.43 WD 3: Seg 8 132-173 6.68 390.73 0.00034 27.5% 45.94 WD 4: Seg 11 179-220 5.41 338.03 0.00173 15.0% 49.87 WD 5: Seg 15 225-265 6.85 397.50 0.00027 25.0% 43.02 WD 6: Seg 19 266-311 4.17 286.93 0.00843 17.5% 42.89 WD 7: Seg 23 312-355 5.91 358.59 0.00091 20.0% 46.83 WD 8: Seg 27 356-394 2.90 234.34 0.04241 17.5% 13.67Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 41-71 ------------D------------------LYDPVDAMSL-NR---EKDR-VV---VSGIRGVLQIIK WD 2 73-131 QNS---TNDLIEGPSIVKDLDMRVYRKGKVNILYSAQNVKW-NQ--LYDQY-IA---TTSSNGSIVCWN WD 3 132-173 ISR--RNKSVFKS------------------HERSATCLDW-HA--TTPYI-LV---SGSRDCTVKSYD WD 4 179-220 -NH---QLTFSDR------------------NCESIRDVAM-CKAPGFDDY-FF---TGDDGGVLRLWD WD 5 225-265 -RR---WVFQKVA------------------HRSFVSTLSL-NP---HNRT-LI-ATGGGRDKMVKIWE WD 6 266-311 WTGPELNRISVVE------------------TTAPLGRVAW-RP---DRPY-HLATCASVNETSVHVWD WD 7 312-355 VRRPYLPYVTYDE------------------HRDSVTDACWPST---DFDV-FM---TCGKDGLVVLHN WD 8 356-394 IDS-----GHAPI------------------SFACDVAFDI-TP---DGTMGLA---VNSEIHAKNDAD WD40 Template TGE---CLRTLSG------------------HTSGVTSVSF-SP---DGKR-LV---SGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |