Input parameters:

  Query = Y23H5B.6 (Len=732)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y23H5B.6, Len=732):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPHTNGKGGGAQKWAGNNKRKRNFDGEQDPSVRKALKEKRLLKKRKQDLKGQEETMLDEVEQKYQEMLKKSSRTFLRFED 80  
WD40-rpts                                                                                      

Query       81 FPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALIISPTREL 160 
WD40-rpts                                     (____________________________________________WD 1

Query      161 ALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFS 240 
WD40-rpts      ___________________________________________)                                    

Query      241 KQLNSIINNLPAERQTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIEAHRK 320 
WD40-rpts                                                                                      

Query      321 KKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCP 400 
WD40-rpts                                                                                      

Query      401 AQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKLEKHSIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSI 480 
WD40-rpts                                                                                      

Query      481 VAYLRSIYTMKDKKVFDVEAIDAAALADSFGLVSVPRVRFLNKKAKKSGEKLMEKEVKEEEEEASLVGKFAIDEDDEDIF 560 
WD40-rpts                                                                                      

Query      561 TVKKPTGEPEQIKEEEAAEKISNITISKTKPLKKAVTKVSAAKKILNKKLKVNTKKTFGAEDDELEELEEGPSTITSYGL 640 
WD40-rpts                                                                                      

Query      641 DIEKARQEIKSGDKEDRKRFKLLREQRRQEKLAKKNRRAEEEEAVEYDEDGSEDEPDISWLPDPDAVRRKYEEEPDEVED 720 
WD40-rpts                                                                                      

Query      721 LEQQALAALGRK 732 
WD40-rpts                  

1 WD40-repeats found in QUERY=Y23H5B.6 (Len=732):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   112-204      3.67  266.24  0.01597       30.0%     40.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  112-204    TGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGINIIVCT

   WD40 Template    TGECLRTLSGHTS-----------------------GVTSVSFSPD--------------------GKRLVSGSED----------GTIKVWD