Input parameters:

  Query = Y23H5B.5 (Len=561)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y23H5B.5, Len=561):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQPYLPAEKFLSRKQETILLDEDVIYWKRMQQLTVFQEPAVVSSVRISPKKPYHVATTSSVRLTLYDTVVCEPLNLFSR 80  
WD40-rpts                                   (_________________WD 1________________)   (________

Query       81 FKKGVCSIDFRHDGRLLAIGGDEGKVRIFDVEKTTGSSKVALRVMQASQSTVKSVHFSPRGDTVFSMADDGKIKQYRVAD 160 
WD40-rpts      _________WD 2________________)        (_________________WD 3________________)   

Query      161 TAYGVNAVPIIEIQAHEDAIRCGAVSSINDHIVLTGGYDHKVRLWDIRSKEKSLELDCEHPVESVLFLPGEQLIATAAGP 240 
WD40-rpts            (_________________WD 4_________________)(_________________WD 5____________

Query      241 IVKIWDTTTGRQLTALQAHYKTVTSLRLATNSTCLLSAGIDRRVNAFRTTNYSLINSWSMPSPVLDIDVSRDDQTMAIGM 320 
WD40-rpts      _____)   (_________________WD 6________________)  (________________WD 7_________

Query      321 GNLLALYRRAEIKKEATASAAIEDKRSLIRTSAPPVKLVEKDRDMQKVDVVAKNADKLKIPKIDGMLSNFKHAAVIKLLF 400 
WD40-rpts      _______)   (_________________WD 8________________)                              

Query      401 GGKFRSAMDTAVVSYLRVIVMRGAIHRALAGQERSVQKNILVFLNHNLYKAQYFSTLKEVVNAFFDVYALEKLDKDVVKH 480 
WD40-rpts                                                                                      

Query      481 VQSLRGSLGRELEVQKMISSLIGSIDLIVSTTKMNVKSSSTALIEDNDVFGEPTIRARDLDELKPSDQGAEEEYEENMQI 560 
WD40-rpts                                                                                      

Query      561 N 561 
WD40-rpts       

8 WD40-repeats found in QUERY=Y23H5B.5 (Len=561):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    30-68       6.41  379.42  0.00048       22.5%     53.69
  WD 2:  Seg  8    72-110      8.68  473.25  2.6e-05       32.5%     55.72
  WD 3:  Seg 12   119-157      8.56  468.31  3.0e-05       37.5%     50.06
  WD 4:  Seg 16   167-206      6.75  393.67  0.00031       15.0%     56.38
  WD 5:  Seg 20   207-246      5.26  332.08  0.00208       22.5%     47.87
  WD 6:  Seg 24   250-288      8.73  475.18  2.5e-05       25.0%     56.35
  WD 7:  Seg 28   291-328      4.61  305.21  0.00479       15.0%     54.54
  WD 8:  Seg 32   332-370      4.32  293.23  0.00694       12.5%     46.17

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-68     RMQQL-TVF-QEPAVVSSVRISP-KKPYHVATTSSVRLTLYD
   WD 2   72-110    -CEPLNLFS-RFKKGVCSIDFRH-DGRLLAIGGDEGKVRIFD
   WD 3  119-157    -KVALRVMQ-ASQSTVKSVHFSP-RGDTVFSMADDGKIKQYR
   WD 4  167-206    -AVPIIEIQ-AHEDAIRCGAVSSINDHIVLTGGYDHKVRLWD
   WD 5  207-246    IRSKEKSLELDCEHPVESVLFLP-GEQLIATAA-GPIVKIWD
   WD 6  250-288    -GRQLTALQ-AHYKTVTSLRLAT-NSTCLLSAGIDRRVNAFR
   WD 7  291-328    -NYSLINSW-SMPSPVLDIDVSR-DDQTMAIGMGN-LLALYR
   WD 8  332-370    -IKKEATAS-AAIEDKRSLIRTS-APPVKLVEKDRDMQKVDV

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD