Accession: Y111B2A.22b - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = Y111B2A.22b (Len=1882)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y111B2A.22b, Len=1882):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPATPVRASSTRISRRTSSRSVADDQPSTSSAVAPPPSPIAIETDEDAVVEEEKKKKKTSDDLEIITPRTPVDRRIPYIC 80  
WD40-rpts                                                                                      

Query       81 SILLTENRSIRDKLVLSSGPVRQEDHEEQIARAQRIQPVVDQIQRVEQIILNGSVEDILKDPRFAVMADLTKEPPPTPAP 160 
WD40-rpts                                                                                      

Query      161 PPPIQKTMQPIEVKIEDSEGSNTAQPSVLPSCGGGETNVERAAKREAHVLARIAELRKNGLWSNSRLPKCVEPERNKTHW 240 
WD40-rpts                                                                                      

Query      241 DYLLEEVKWMAVDFRTETNTKRKIAKVIAHAIAKQHRDKQIEIERAAEREIKEKRKMCAGIAKMVRDFWSSTDKVVDIRA 320 
WD40-rpts                                                                                      

Query      321 KEVLESRLRKARNKHLMFVIGQVDEMSNIVQEGLVSSSKSPSIASDRDDKDEEFKAPGSDSESDDEQTIANAEKSQKKED 400 
WD40-rpts                                                                                      

Query      401 VRQEVDALQNEATVDMDDFLYTLPPEYLKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSS 480 
WD40-rpts                                                                                      

Query      481 SDLTAEQLQDPTAEDGNGDGHGVLENVDYVKLNSQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPFLIRGQLRE 560 
WD40-rpts                                                                                      

Query      561 YQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFG 640 
WD40-rpts                                                                                      

Query      641 TAKERAEKRKGWMKPNCFHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQN 720 
WD40-rpts                                                                                      

Query      721 SLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPFILRRLKKEVEKQLPEKTEHIVNCS 800 
WD40-rpts                                                                                      

Query      801 LSKRQRYLYDDFMSRRSTKENLKSGNMMSVLNIVMQLRKCCNHPNLFEPRPVVAPFVVEKLQLDVPARLFEISQQDPSSS 880 
WD40-rpts                                                                                      

Query      881 SASQIPEIFNLSKIGYQSSVRSAKPLIEELEAMSTYPEPRAPEVGGFRFNRTAFVAKNPHTEESEDEGVMRSRVLPKPIN 960 
WD40-rpts                                                                                      

Query      961 GTAQPLQNGNSIPQNAPNRPQTSCIRSKTVVNTVPLTISTDRSGFHFNMANVGRGVVRLDDSARMSPPLKRQKLTGTATN 1040
WD40-rpts                                                                                      

Query     1041 WSDYVPRHVVEKMEESRKNQLEIVRRRFEMIRAPIIPLEMVALVREEIIAEFPRLAVEEDEVVQERLLEYCELLVQRFGM 1120
WD40-rpts                                                                                      

Query     1121 YVEPVLTDAWQCRPSSSGLPSYIRNNLSNIELNSRSLLLNTSTNFDTRMSISRALQFPELRLIEYDCGKLQTLAVLLRQL 1200
WD40-rpts                                                                                      

Query     1201 YLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIF 1280
WD40-rpts                                (_________________________WD 1________________________

Query     1281 YDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLFDGEN 1360
WD40-rpts      _)                                                                              

Query     1361 VEVTAVADVATTMSEKEMEVAMAKCEDEADVNAAKIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQLKPIE 1440
WD40-rpts                                                                                      

Query     1441 RYAINFLETQYKPEFEEECKEAEALIDQKREEWDKNLNDTAVIDLDDSDSLLLNDPSTSADFYQSSSLLDEVRDRRRRSS 1520
WD40-rpts                                                                                      

Query     1521 SLLQKAAQKPAKKPQNFQIRARSPSKRKSQAPSFDPYVSYAPHALASPPDSPRKRRSRGARSLGSGGGGGGGSRSVGRPA 1600
WD40-rpts                                                                                      

Query     1601 RRSVKKEESDDDDEDYCQEEEVKRNPAEKVPPKRKRVVFVEPPEVKPPEPKKRVVVPAPSSSSSALTTLPQQGPLISLPK 1680
WD40-rpts                                                                                      

Query     1681 AVPVVPRPQQQAPPQLIKKHQQTLMPVKVLKISGGGGGTPGPSSVSPGPSILRRTVVPGIGAGGVGRLPLVRMPVRPPFP 1760
WD40-rpts                                                                                      

Query     1761 GSQAPAPPLRSGVAPTAPAAAPRQFVVPSSRVRVITTRTPVATTMVQQQQSPSPLMFPVRVVQRPGPSGPPPPGPPDRPG 1840
WD40-rpts                                                                                      

Query     1841 FGIYEKPRFSLGSRRSRGDSGPEDPAPPQPPPPTTSRPPPQA 1882
WD40-rpts

1 WD40-repeats found in QUERY=Y111B2A.22b (Len=1882):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12  1227-1282     2.82  230.94  0.04702       22.5%     32.33

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1227-1282   HGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGAD-TVIFYD

   WD40 Template    TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD