Input parameters:

  Query = Y111B2A.12b (Len=224)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y111B2A.12b, Len=224):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPDGKRIMCGYSDGIVRLWLLREETSTHLYFHSPITAIDHHVTQTVAIIGTQSGTVNVVNTASPDNVLKKISLLPPPGVK 80  
WD40-rpts      (_______WD 1_______)(_________________WD 2_________________)(______________WD 3_

Query       81 STTITAAGTAAMEEGRQEEEEDEDVGNCVESLAMAPSHPWFAVGRNDGTMCIYEMDSNSPRSIFQSNQMMAIVKVIWSME 160 
WD40-rpts      _____________)(_________________WD 4_________________)   (__________________WD 5

Query      161 GNAPYVTAGSIDGTIRIFDARDSSLVKELHNGGDEVLDVLVIQSNPHRFMTAGSGGIVRVFDLN 224 
WD40-rpts      __________________)   (_________________WD 6_________________)  

6 WD40-repeats found in QUERY=Y111B2A.12b (Len=224):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-20       3.14  244.56  0.03106       22.5%     29.29
  WD 2:  Seg  3    21-60       9.25  496.65  1.3e-05       20.0%     54.27
  WD 3:  Seg  7    61-94       6.44  380.57  0.00046       15.0%     36.29
  WD 4:  Seg 10    95-134      8.04  446.60  6.0e-05       17.5%     54.29
  WD 5:  Seg 14   138-179      6.74  392.97  0.00031       25.0%     55.87
  WD 6:  Seg 18   183-222      7.57  427.54  0.00011       17.5%     54.02

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-20     ----------------------MPDG--KRIMCGYSDGIVRLWL
   WD 2   21-60     LREETSTHLY-FHSPITAI-DHHVTQ--TVAIIGTQSGTVNVVN
   WD 3   61-94     ------TASP-DNVLKKIS-LLPPPG--VKSTTITAAGTAAMEE
   WD 4   95-134    GRQEEEEDED-VGNCVESL-AMAPSH--PWFAVGRNDGTMCIYE
   WD 5  138-179    -NSPRSIFQSNQMMAIVKV-IWSMEGNAPYVTAGSIDGTIRIFD
   WD 6  183-222    -SSLVKELHN-GGDEVLDVLVIQSNP--HRFMTAGSGGIVRVFD

   WD40 Template    TGECLRTLSG-HTSGVTSV-SFSPDG--KRLVSGSEDGTIKVWD