Input parameters:

  Query = Y111B2A.12a (Len=417)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y111B2A.12a, Len=417):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEDNHRIEESEIDEIIEIDDDAEMKYASDDEDQQSTSNADVPAEIIDDSLMSLQAHAQDCFTVALASNRWLATGGEDDV 80  
WD40-rpts      (_____________________WD 1_____________________)(________________WD 2___________

Query       81 AFLFDQNQSESEPVLKVEHKDSVTQVMFNHSETLLATGDLSGKIMISEMATKKVRAEIDECNDLEWMCWHQTADILFAGD 160 
WD40-rpts      ____)   (_________________WD 3_________________)  (_________________WD 4________

Query      161 KDGILWMWLIGNKGIAQSKVYAGNGSSCTTGCLMPDGKRIMCGYSDGIVRLWLLREETSTHLYFHSPITAIDHHVTQTVA 240 
WD40-rpts      ________)(___________________WD 5___________________)(_________________WD 6_____

Query      241 IIGTQSGTVNVVNTASPDNVLKKISLLPPPGVKSTTITAAGTAAMEEGRQEEEEDEDVGNCVESLAMAPSHPWFAVGRND 320 
WD40-rpts      ____________)(______________WD 7______________)(_________________WD 8___________

Query      321 GTMCIYEMDSNSPRSIFQSNQMMAIVKVIWSMEGNAPYVTAGSIDGTIRIFDARDSSLVKELHNGGDEVLDVLVIQSNPH 400 
WD40-rpts      ______)   (__________________WD 9__________________)   (_________________WD10___

Query      401 RFMTAGSGGIVRVFDLN 417 
WD40-rpts      ______________)  

10 WD40-repeats found in QUERY=Y111B2A.12a (Len=417):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-48       6.34  376.65  0.00052       12.5%     32.42
  WD 2:  Seg  4    49-85       7.02  404.52  0.00022       22.5%     48.91
  WD 3:  Seg  8    89-128      7.59  428.09  0.00011       27.5%     52.65
  WD 4:  Seg 12   131-169      7.21  412.54  0.00017       15.0%     55.73
  WD 5:  Seg 16   170-213      9.20  494.78  1.3e-05       32.5%     56.39
  WD 6:  Seg 20   214-253      8.34  459.27  4.0e-05       20.0%     54.31
  WD 7:  Seg 24   254-287      5.54  343.31  0.00147       15.0%     34.23
  WD 8:  Seg 27   288-327      9.22  495.40  1.3e-05       17.5%     49.54
  WD 9:  Seg 30   331-372      6.38  378.28  0.00050       25.0%     55.93
  WD10:  Seg 34   376-415      7.18  411.07  0.00018       15.0%     53.89

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-48     MDE----DNHRIEESEIDEII-EI-DDDA-EMKYASDDE--DQQSTSNADVPAEIID
   WD 2   49-85     --D----S--------LMSLQ-AH-AQDC-FTVALASN---RWLATGGEDDVAFLFD
   WD 3   89-128    -SE----S--------EPVLKVEH-KDSV-TQVMFNHSE--TLLATGDLSGKIMISE
   WD 4  131-169    -TK----K--------VRAEI-DE-CNDL-EWMCWHQTA--DILFAGDKDGILWMWL
   WD 5  170-213    IGNKGIAQ--------SKVYA-GN-GSSC-TTGCLMPDG--KRIMCGYSDGIVRLWL
   WD 6  214-253    LRE----E--------TSTHL-YF-HSPI-TAIDHHVTQ--TVAIIGTQSGTVNVVN
   WD 7  254-287    ------------------TAS-PD-NVLK-KISLLPPPG--VKSTTITAAGTAAMEE
   WD 8  288-327    GRQ----E--------EEEDE-DV-GNCV-ESLAMAPSH--PWFAVGRNDGTMCIYE
   WD 9  331-372    -NS----P--------RSIFQ-SNQMMAI-VKVIWSMEGNAPYVTAGSIDGTIRIFD
   WD10  376-415    -SS----L--------VKELH-NG-GDEVLDVLVIQSNP--HRFMTAGSGGIVRVFD

   WD40 Template    TGE----C--------LRTLS-GH-TSGV-TSVSFSPDG--KRLVSGSEDGTIKVWD