Input parameters:

  Query = Y110A7A.9a (Len=1019)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y110A7A.9a, Len=1019):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPHTVPGCLHPSNGRNAIDWNDGGLIAYGSHNLIFVVDVMQYKRIQSIEHHQSAINIIRWSPARSPFADLSPSSLQPIIA 80  
WD40-rpts      (________________WD 1________________)   (_______________________WD 2___________

Query       81 SSDISGHIIISNSVTAAQINKFSHPNSSVLQMFWYPWKDISRDFLLVLHSSSTVVLWNTVTGEKVWNHTYSHVPLFDFTV 160 
WD40-rpts      ___________)   (___________________WD 3__________________)   (_________________W

Query      161 DPFSLRNVIFSSSGNKVLVCSDIALSEPASSGHLFQITSEDNSTTSTNTNIYLITYHKAYRNTVFIAINSGLYLVNPELM 240 
WD40-rpts      D 4_________________)                 (________________WD 5________________)   (

Query      241 CCLARVPIESNIVSWMPTGRRDALFAVHSNGATTFRVTKFEPTEEKKPNASFSMDKVCQTECVRPMNNQRIVAAALCPTT 320 
WD40-rpts      _________________WD 6_________________)                 (__________________WD 7_

Query      321 QSTVSVLYQSGKLAFWQLSNGRLPLLYRSSFIEDVLEFNDNLSTKSIGELSLHQLSQMGSLSSGVTCVRMRPMDELTKVE 400 
WD40-rpts      ________________)                                                       (_______

Query      401 NDPFANTALGTLHLAAVGTNSGTVHLVDVFTSQIYRDFCVQPSLVKCLEWGGVYSLVTAGYNHSLSASQIVRNDVFITDI 480 
WD40-rpts      ________WD 8_______________)   (_____________________WD 9_____________________)(

Query      481 RTGLAKRIRPETDESPITIIRVSYYHCYLAIAFQREPLEIWDLKGLRMLRKMSRSCPLIIDMAWSNKHHSIKTTESTLQS 560 
WD40-rpts      ___________________WD10__________________)   (_________________WD11_____________

Query      561 VYRENLVLLDSENRIYHITLRGLHVRDGKIVNTQWKSASAQICAMAWKDDILAVGDVEGNLVVWDLGRRQSRQVRDVSHS 640 
WD40-rpts      ___)                (____________________WD12___________________)   (___________

Query      641 RVHRMTFSRLAGDHTMAVLHSKEVTLWDTEAMTRIQSIRMDSSKLCLDADLCGLSPLVLSNDNTLRFVVSNTKNQPILEK 720 
WD40-rpts      ______WD13_________________)                                                    

Query      721 EIPFLYKDDSMNNVRKHLEGSGSRKSSEDRSSADKSEDSTLEDAIAWIDQNQRPQIETLEADLSKLQRERVVRRFIGDHF 800 
WD40-rpts                                                                                      

Query      801 SADLLSIVIDRFAHSETEHLAPNLQMFWENGAFKERESRVISVACAAEQAMERRLVEQAVVVGGSAKERVTDRLIVSADL 880 
WD40-rpts                                                                                      

Query      881 RYASIKAALLVSCQDNEKAKSLIKLIATNLIASDLIEDGVELLFLVGAGGDACKYLQSQKLWTKSIVYAKMGLDDPTEVE 960 
WD40-rpts                                                                                      

Query      961 SKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARLILRTTTSTPPLSSCPTP 1019
WD40-rpts                                                                 

13 WD40-repeats found in QUERY=Y110A7A.9a (Len=1019):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       2.96  236.82  0.03933       15.0%     30.07
  WD 2:  Seg  4    42-92       5.52  342.57  0.00150       17.5%     53.17
  WD 3:  Seg  8    96-138      5.51  342.19  0.00152       17.5%     53.08
  WD 4:  Seg 12   142-181      4.90  317.06  0.00332       12.5%     54.53
  WD 5:  Seg 17   199-236      5.20  329.60  0.00225        2.5%     36.01
  WD 6:  Seg 20   240-279      3.98  279.26  0.01069       17.5%     38.61
  WD 7:  Seg 25   297-337      5.41  338.03  0.00173        7.5%     53.01
  WD 8:  Seg 31   393-428      6.16  368.95  0.00066       12.5%     24.09
  WD 9:  Seg 33   432-479      5.08  324.39  0.00264       15.0%     44.77
  WD10:  Seg 37   480-522      6.32  375.80  0.00054       17.5%     52.38
  WD11:  Seg 41   526-564      4.44  298.20  0.00595       10.0%     43.83
  WD12:  Seg 45   581-625      6.30  375.01  0.00055       20.0%     47.56
  WD13:  Seg 49   629-668      6.23  372.01  0.00060       17.5%     54.41

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MPHTVPG-----CLHPSNGRNA---------I-DWND----GG--------------LIAYGSHNLIFVVD
   WD 2   42-92     -YKRIQS-----IEHHQSAINI---------I-RWSP----ARSPFADLSPSSLQPIIASSDISGHIIISN
   WD 3   96-138    -AAQINK-----FSHPNSSVLQ---------M-FWYPWKDISR------------DFLLVLHSSSTVVLWN
   WD 4  142-181    -GEKVWN-----HTYSHVPLFD---------F-TVDP---FSL------------RNVIFSSSGNKVLVCS
   WD 5  199-236    SED--NS-----TTSTNTNIYL---------I-TYHK----AY------------RNTVFIAINSGLYLVN
   WD 6  240-279    -MCCLAR-----VPIESNIVSW---------MPTGRR----DA------------LFAVHSNGATTFRVTK
   WD 7  297-337    VCQTECV-----RPMNNQRIVA---------A-ALCP---TTQ------------STVSVLYQSGKLAFWQ
   WD 8  393-428    ----MDE-----LTKVENDPFA---------N-TALG----TL------------HLAAVGTNSGTVHLVD
   WD 9  432-479    -SQIYRD-----FCVQPSLVKCLEWGGVYSLV-TAGY----NH------------SLSASQIVRNDVFITD
   WD10  480-522    IRTGLAK--RIRPETDESPITI---------I-RVSY----YH------------CYLAIAFQREPLEIWD
   WD11  526-564    -LRMLRK-----MSRSCPLIID---------M-AWSN----KH------------HSIKTTESTLQSVYRE
   WD12  581-625    RGLHVRDGKIVNTQWKSASAQI---------C-AMAW----KD------------DILAVGDVEGNLVVWD
   WD13  629-668    -RQSRQV-----RDVSHSRVHR---------M-TFSR---LAG------------DHTMAVLHSKEVTLWD

   WD40 Template    TGECLRT-----LSGHTSGVTS---------V-SFSP----DG------------KRLVSGSEDGTIKVWD