Input parameters:

  Query = W09G3.6a (Len=1125)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (W09G3.6a, Len=1125):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEGVNEVQSTSRGSHDDFIDRIPTHFLVELTSLDELAFPANSTKRVKYTCVASTSKSLCLGTSTGSVYIFSRYAAKSRSR 80  
WD40-rpts                                     (_________________WD 1_________________)         

Query       81 TNSGAPVPVQVFTTRDGQISTISVSPSEELMAIGGDSGRVSVAQLNNGQPPTLIYSTPGDARSPDRVTALSWSADLKTVY 160 
WD40-rpts           (_________________WD 2________________) (_____________________WD 3_________

Query      161 SGHSSGTLHCHRLTSRSVFRAAHQKLMKFDGEIIQIDTLQSHVLIATSLAAHLFHVESGTIQQVGKKTRSSPAPLGACYV 240 
WD40-rpts      ___________)                                                                    

Query      241 HGESAFIVAARPNGRLWEANLVGVVYRTHQYRQSGQIPRAPPISFRSAFPTDSAQFCGLHPDNQDVSLQKIHVIHVDNGG 320 
WD40-rpts                                                                                      

Query      321 GRSLVVSTAGSRICVVEMETSRVTCCAELDYDILDVSTCGNDIFVLLNDSKGLRKFSVFERQKTLEKLNLKGIFMQSAQL 400 
WD40-rpts                                                                                      

Query      401 VLFCSPHITYPMPLLTTIIEGLGTLSRKKETEKLQLALQKMLDERKINQSTYDNNIEEMERKESLKKLKKTPESKKLPSG 480 
WD40-rpts                                                                                      

Query      481 VHRVLQTAAQCSGYDDDFNFSTPQALRERSRSSPCGPESPIPLEKRASEPASLELRQEYWRKNGTPDVCEEDILHRARQI 560 
WD40-rpts                                                                                      

Query      561 LEDENSEKLVEKESLRTLLQLEGIKKDEIRFTPTVTIANAAKALAELALAVPVDLTAIWNSGNSQNSQNPQNPEKNGSKI 640 
WD40-rpts                                                                                      

Query      641 SKNPPQIVKVIRPGHRLQTTTTKPIATVTPITVPVANADDVAVNNMGMISEEMRRKQDEMWLDLRLTQHIKKHSSHANDD 720 
WD40-rpts                                                                                      

Query      721 VIITSSPTSSNNVPKSDTDYTLTTGSEGPTPTSEHIWTNPLDDDVITPTSSSNCATCGMHRSWAATSLLMAVCGGANVLR 800 
WD40-rpts                                                                                      

Query      801 DEFQRNGAIPQSHVAWSTLLRHVASVTSSQEAICPKCEMSLSTVERVCSDAWKTANGMAEDGVRPNVERIFERCISNSSR 880 
WD40-rpts                                                                                      

Query      881 EKLEAIVMRREFGKFEDCKDFDQKIDFPGEKPIKIDETDENIDFLNATCLQWTRAVPLRTFLALSVFTIGKKATISIITA 960 
WD40-rpts                                                                                      

Query      961 ENQYIARRMAPADWCSIVVIGAREIGFKDLLGVKTITSVFDSVGASGWVAPRGKPPPTAAAATSSRKVTSPNGSAPAPSI 1040
WD40-rpts                                                                                      

Query     1041 SSWIVDTNGKCPMCTLPVKMVVGGADRGVISYFCGHVYHKICLTGRFNAGCVACRVRARRATRAGSSATSSPVASPIMSP 1120
WD40-rpts                                                                                      

Query     1121 RHQKI 1125
WD40-rpts           

3 WD40-repeats found in QUERY=W09G3.6a (Len=1125):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    32-71       3.91  276.32  0.01170       17.5%     42.11
  WD 2:  Seg  4    86-124      6.00  362.34  0.00081       15.0%     53.96
  WD 3:  Seg  8   126-172      5.81  354.47  0.00104       30.0%     42.74

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-71     SLDELAFP-------ANSTKRVKYTCVASTSKSLCLGTSTGSVYIFS
   WD 2   86-124    -PVPVQVF-------TTRDGQISTISVSPSEELMAIGGDSGRVSVAQ
   WD 3  126-172    NNGQPPTLIYSTPGDARSPDRVTALSWSADLKTVYSGHSSGTLHCHR

   WD40 Template    TGECLRTL-------SGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD