Input parameters:

  Query = W08D2.3c (Len=543)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (W08D2.3c, Len=543):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWMAFSKISSAMKPIFDRIVEAKETASKHPSLFIIHLWIYSLIGFTVTFISLSYSHSACYSMISSAHLFNLHFAFNGSIF 80  
WD40-rpts                                                                                      

Query       81 LGAVFHSNLSRRLSLKYVYITCLILISACFLALPHAAHIILLLCIVFIVFGTVLGISLSAVISNFVVIFKQQSFLLLQFL 160 
WD40-rpts                                                                                      

Query      161 HLIGAFGSVTAVMFYQSAPSEHQEDCNSKRNPVLPTGPHIPSLEKFYLNPSLRQDYIFYATAILQIPLLILCLKTEFNVS 240 
WD40-rpts                                                                                      

Query      241 MKTSISIRRTEYDDIETNNNNNNHHHENCQSLTQQSDVSSLKLVLLCSVVASIANIMYTMFPFLILAQPSASIFYYQLFL 320 
WD40-rpts                                                                                      

Query      321 IFFMWGRAVSLFFSDYMAPYFLVGVSIFGCGIGCCCIASEQFLLVGSLIFGFFLAPLLPALVIYINHSLSLKSNNTFTLL 400 
WD40-rpts                                                                       (______________

Query      401 SGHCSGHLIFPLLLTLTNSSNSRLFIAFNFVAIVILVIILVSILSLHAQIERMQASQSGLNLFVSRFLSGESLLKRTRSI 480 
WD40-rpts      ___________________________________WD 1_________________________________________

Query      481 RPLISRLRPNSYRRFANRRGLNTRSPSPAVPHSTEVSVSPDELSRLNEPKEIRSGSMLMPTRV 543 
WD40-rpts      ________)                                                      

1 WD40-repeats found in QUERY=W08D2.3c (Len=543):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   386-489      3.36  253.47  0.02365       25.0%     29.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  386-489    NHSLSLKSNNTFTLLSGHCSGHLIFPLLLTLTNSSNSRLFIAFNFVAIVILVIILVSILSLHAQIERMQASQSGLNLFVSRFLSGESLLKRTRSIRPLISRLRP

   WD40 Template    TGEC-------LRTLSGHTSGVTS------VSFSPDGKRLVSG---------------------------SEDGT-------------------I-----KVWD