Input parameters:

  Query = W07E6.2 (Len=473)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (W07E6.2, Len=473):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTESPQISVSFVSEDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVDSIRKSLEEIDFETTLK 80  
WD40-rpts                                                  (_______________________WD 1________

Query       81 LVYQPQAVFRVRPVTRCSASIPGHGEPVISAQFSPDGRGLASGSGDQTMRIWDIELELPLHTCKSHKSWVLCIAWSPDAT 160 
WD40-rpts      ______________)(________________WD 2________________)   (_________________WD 3__

Query      161 KIASACKNGEICIWNAKTGEQIGKTLKRHKQWITSLAWQPMHKDPTCRLLASCGKDGNIFIWDTVQGTVVRCLSGHTASV 240 
WD40-rpts      ______________)    (___________________WD 4___________________)   (_____________

Query      241 TCLRWGGEGLIYSGSQDRTVKMWRADDGVMCRNMTGHAHWINTLALNTDYALRTSCFEPSKRCIKPDTVEECQKVAQTRY 320 
WD40-rpts      ___WD 5________________)   (_________________WD 6________________)        (_____

Query      321 EAALEIAGGERLVSGSDDFTLFMWNPKETKQSINRMTGHMQLVNQVVFSPDTRYIASASFDKSVKLWCGRTGKYLASLRG 400 
WD40-rpts      ________WD 7____________)    (_________________WD 8________________)   (________

Query      401 HVGPVYQVAWSADSRLLVSGSADSTLKVFELKTKSLYYDLPGHGDEVFTVDWSPEGTKVVSGGKDKVLKLWRQ 473 
WD40-rpts      _________WD 9________________)   (_________________WD10________________) 

10 WD40-repeats found in QUERY=W07E6.2 (Len=473):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    45-95       4.81  313.36  0.00372       10.0%     31.94
  WD 2:  Seg  9    96-133     10.31  540.57  3.2e-06       45.0%     52.91
  WD 3:  Seg 13   137-175      9.66  513.83  7.4e-06       30.0%     56.62
  WD 4:  Seg 17   180-223      7.79  436.56  8.1e-05       32.5%     46.97
  WD 5:  Seg 20   227-264      9.14  492.16  1.4e-05       42.5%     54.86
  WD 6:  Seg 24   268-306      7.86  439.20  7.5e-05       17.5%     51.72
  WD 7:  Seg 28   315-345      5.55  343.90  0.00144       25.0%     40.88
  WD 8:  Seg 31   350-388      9.59  510.84  8.1e-06       32.5%     52.71
  WD 9:  Seg 35   392-430     10.30  540.10  3.3e-06       45.0%     56.93
  WD10:  Seg 39   434-472      9.54  508.77  8.6e-06       35.0%     48.66

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-95     SSDDPVPISFFTTEGAEIVDSIRKSLEEIDFET-----TLKLVYQPQAVFRVRPVT
   WD 2   96-133    --R-----CSASIPG------HGEPVISAQFSP-----DGRGLASGSGDQTMRIWD
   WD 3  137-175    -EL-----PLHTCKS------HKSWVLCIAWSP-----DATKIASACKNGEICIWN
   WD 4  180-223    -EQ-----IGKTLKR------HKQWITSLAWQPMHKDPTCRLLASCGKDGNIFIWD
   WD 5  227-264    -GT-----VVRCLSG------HTASVTCLRWGG-----EG-LIYSGSQDRTVKMWR
   WD 6  268-306    -GV-----MCRNMTG------HAHWINTLALNT-----DYALRTSCFEPSKRCIKP
   WD 7  315-345    VAQ--------------------TRYEAALEIA-----GGERLVSGSDDFTLFMWN
   WD 8  350-388    -KQ-----SINRMTG------HMQLVNQVVFSP-----DTRYIASASFDKSVKLWC
   WD 9  392-430    -GK-----YLASLRG------HVGPVYQVAWSA-----DSRLLVSGSADSTLKVFE
   WD10  434-472    -KS-----LYYDLPG------HGDEVFTVDWSP-----EGTKVVSGGKDKVLKLWR

   WD40 Template    TGE-----CLRTLSG------HTSGVTSVSFSP-----DGKRLVSGSEDGTIKVWD