Input parameters:

  Query = W06E11.2 (Len=196)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (W06E11.2, Len=196):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGKKRKHQDSDSEQSGKRVKKVEEARNGVADMTIDESSDFQVFLIKKPIGVSLEDLEALKWSNDEEVLTKTKLKTESGVF 80  
WD40-rpts                                (_______________________WD 1______________________)   

Query       81 RAIVAPKSKKERMVHIPAFREREEADSKNIKAQSFVTGAITILPQEVKPKVLGGFIYEEGEEPVEGSSEVHPGLKKIKKT 160 
WD40-rpts                                                                                      

Query      161 AILDLESRQQRNKAYGTTTEGDGKPRKLANIIEKMN 196 
WD40-rpts                                          

1 WD40-repeats found in QUERY=W06E11.2 (Len=196):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    27-77       3.69  267.12  0.01554       20.0%     24.79

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-77     NGVADMTIDESSDFQVFLIKKPIGVSLEDLEALKWSNDEEVLTKTKLKTES

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV-----SGSED------GTIKVWD