Input parameters:

  Query = W04G3.5b (Len=354)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (W04G3.5b, Len=354):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPERADASSGMVLLTGNSHPELAKMVSERLEIRLGEATVYNKTNRETSVDIKQSVRGKHVFILQSGSKNVNNDVMELLVL 80  
WD40-rpts                                                                                      

Query       81 IYACKTSMSKTITVIMPYLPYSKQCRMLRRSSIAMKLVAEMICKAGASRLVSLDLYKKEIQGFFSCPVDNLRASPFFLQH 160 
WD40-rpts                                                   (__________________________________

Query      161 IKTNIPDYKNAIIVAKSPGVMNKATSYADRLRLGCVAVIHGEQKDEEESGLEDGRQSPPPNVTSYDFLPAQESKQKPPLT 240 
WD40-rpts      _WD 1__________________________________)                                        

Query      241 VVGDVGGRIAIMVDDIIDDAQSFVAAAEVLKARGAYKIYVIATHGVLSSDAPALLEASPITEVIVTNTVPHDLQKMRCHK 320 
WD40-rpts                                                                                      

Query      321 IKTVDVSLMICEAIRRIFHNESMGQLFRDVTLDD 354 
WD40-rpts                                        

1 WD40-repeats found in QUERY=W04G3.5b (Len=354):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   126-200      3.28  250.11  0.02621       12.5%     27.20

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  126-200    GASRLVSLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNIPDYKNAIIVAKSPGVMNKATSYADRLRLGCVAVIH

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS-------------------GSEDGT----------------IKVWD