Input parameters:

  Query = W03D8.11 (Len=237)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (W03D8.11, Len=237):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRFRLFLPSFLVVFTFAGVVDRRKTGNDADDLKFAFGTIEHGQNYGARPFLQIPVDGEKLTVPKAFYHYSENEMSAGGSF 80  
WD40-rpts                                                                                      

Query       81 GLPDETRLLDTDGKFVNNRKEINGIYLPLPNMEPINLHFVNQKVFEKGIDTRAHEESPESVLHRAKMICLTGSEFECERQ 160 
WD40-rpts                                 (__________________________________________WD 1______

Query      161 LLKYHRAKSEALRRDRMPLHEQLMELGQLSSSAKIHDKEGNGMGVVVGMPGYDPLYIGANLGHDNDQHLNIRFSPPA 237 
WD40-rpts      ____________________________________)                                        

1 WD40-repeats found in QUERY=W03D8.11 (Len=237):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   108-197      3.51  259.76  0.01949       17.5%     -2.97

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  108-197    PLPNMEPINLHFVNQKVFEKGIDTRAHEESPESVLHRAKMICLTGSEFECERQLLKYHRAKSEALRRDRMPLHEQLMELGQLSSSAKIHD

   WD40 Template    TGECLRTLSGHTS---------GVTSVSFSP------DGKRLVSGS-----------------------------------EDGTIKVWD