Input parameters:

  Query = T28F4.1 (Len=285)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T28F4.1, Len=285):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNMTYKLNDLTEEIFGHLCNVALHKCSDKSEKKRAGCGGRAMRKRVLIKNFVSDLFKMPKKTSSSREQDMASSDEEYEEY 80  
WD40-rpts      (_______________________________________________________WD 1____________________

Query       81 DMSDVSFYDEEVDEFRLEDLTHYEHASMHQNDLWLHQPYTGTDMGGFGGMSSSMSMASAGMTSYGSYDMPSSYSAPSSVG 160 
WD40-rpts      __________________________________)                                             

Query      161 YQPFDMYGSSMSESATEGDMPLPSDPLASMSGMLPAVESSSFDHFSSPTTSVQSSFFPGDDYFLSNVGPEPIFTDIIPEP 240 
WD40-rpts                                                                                      

Query      241 LSHEDTHELTDLDVATGESHANKNKRRSTELFDDFTGSFQKRIKI 285 
WD40-rpts                                                   

1 WD40-repeats found in QUERY=T28F4.1 (Len=285):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-115      2.94  236.03  0.04029       22.5%      5.27

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-115    MNMTYKLNDLTEEIFGHLCNVALHKCSDKSEKKRAGCGGRAMRKRVLIKNFVSDLFKMPKKTSSSREQDMASSDEEYEEYDMSDVSFYDEEVDEFRLEDLTHYEHASMHQNDLWL

   WD40 Template    TGECLRTLSG-------------HTSGVTS--------------------------------VS------FSP-------DGKRLVSG--------SEDGT---------IKVWD