Input parameters:

  Query = T28D9.4a (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T28D9.4a, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRWKKPKRFLCRKTQDYERIDDIENNDEDSDDDVILEINHDGEHEDNYRNPMIRMAYIPIVIIAVIYSSFIFFFALFIE 80  
WD40-rpts                                                                                      

Query       81 ASAHTNSKCSEAHEKEKMSSGLLTPPMKHILEDRTKYKNEIKLLKTFNVHLTYSTWINSILEILALIYSFLLLLVDRQYL 160 
WD40-rpts                                                                                      

Query      161 YPLSQVILYLFTRINFVYTDIYGRFFSPSDVVGAITTEVIYDLIRWQSESKLFKVFPFTPCPLPLLLFPIFLSILQVFAN 240 
WD40-rpts                                                                                      

Query      241 QKHTHVYETVLLIFFRIMTRFAGRRPFILSYQVLRSGIASFQSATSHDIAKTLNKVTHCCLNVFASSAFFVLLMVLVDKQ 320 
WD40-rpts                           (__________________________________________________________

Query      321 GLDKTPKCLAALYAFAMWMQLATVRYRHFIPLILTVVIELVITGLVSYQTGEFIFSHTAEVKDYVFTVMFTIIAVFRFVF 400 
WD40-rpts      WD 1__________________________________________________________)                 

Query      401 IIILFKVLIYKNPPHSLTTTVLLKPTNIPVTFSSIKAPQELDPTNPYYPQTVYNSNQSKNNLLPLTRD 468 
WD40-rpts                                                                          

1 WD40-repeats found in QUERY=T28D9.4a (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   262-383      2.98  237.86  0.03811       17.5%     -3.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  262-383    AGRRPFILSYQVLRSGIASFQSATSHDIAKTLNKVTHCCLNVFASSAFFVLLMVLVDKQGLDKTPKCLAALYAFAMWMQLATVRYRHFIPLILTVVIELVITGLVSYQTGEFIFSHTAEVKD

   WD40 Template    TGECLRTLS--------------------------GHTS-----------------GVTSVSFS---------------------PD------------------GKRLVSGSEDGTIKVWD