WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: T27B1.1 [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = T27B1.1 (Len=1737) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (T27B1.1, Len=1737): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKLKYLSTILPAQDGEAKISNISCSPNGSRAAIACSDRSVALLDENGVQKDRFTCKPIDAKYGKKSFTVLCMTFSPDSSR 80
WD40-rpts (_________________WD 1_________________) (___________________WD 2_____
Query 81 IAIGQSDNVLFIYKVGTSWNEKKVIVNKFVQPSAVTCLSWPFDDKILVGQLDGKVRIGLIKTNKCSSLYKTDETVVSIQT 160
WD40-rpts _____________)(____________________WD 3___________________) (_________________W
Query 161 HPKRTSFVSAHQDGSIILYNFSSRTQSKICTLQVPPYNLVFTNHGLVVATSDRRVLSYTENGVVQQQFDYNDQSEKEFSS 240
WD40-rpts D 4________________) (_________________WD 5________________) (_______________
Query 241 ISCDPTAQNVVVASYDRLRLFSWSARRGAWDEGAPLEIQNAYTIGALGWKMDGSTIYAGTVCGGVFSVDCCLRRGMLKSR 320
WD40-rpts __WD 6_________________) (_________________WD 7________________)
Query 321 FETTYVAPSHVILRDVTNDTRTNVISNKGLAIDELKIMGKDRYVIGYTSSSIIIADTESQRFSELEWQSGGHEKFYFDFN 400
WD40-rpts (_________________WD 8________________)
Query 401 NCCLIINAGEVTVVEYGVDGSLGWVRTELTSPHLLSVQVSGPDVEEHKKVKKLAYLVDPTTISIINLINGQQESFINHTG 480
WD40-rpts (_________________WD 9_________________) (___________
Query 481 AVDWIELNERASKLLYRDKRSKVTLVDISSDQRSVLLSFCTYVQWVPMSDVIVAQSGDNLSIWYNPDLPEQVTNMKIKGE 560
WD40-rpts ______WD10________________)
Query 561 VEAVLRDADRTEVIVQEPTAKVAYELDNTQIEFGAALEKRDFDRAVAFLESNTSGTDAYSMWIRVAEMALEHGNLFVAQR 640
WD40-rpts
Query 641 CYAAINDVAKVRKLHDILEIADEASISIGGDGTHFYKVRAMLAIMGRKFKEAERIFLEQNDTESAIGMYTSLHKWDEALE 720
WD40-rpts
Query 721 LAKVLNYPEYEQLKTSYLRALSDTGQDSKAAELKVSDGDTLSAIQLYIKSNKPLSALSAANNDSVLSQDENILRQIADSL 800
WD40-rpts
Query 801 VKSQLYDKAGDVYEKLKDFDKAVEYFKKGDAYGKAIQLARFAFPEKVVTLEQEWGLHLEYIGQYDAAVNHFVEANDLKKA 880
WD40-rpts
Query 881 VEAAIRAKEWPKALSIVENIQDQKVRTGYYGEIADHYSNKGDFERAERLFVEAGLFNDAIMMYGKNNKWIDAFRLSEEFH 960
WD40-rpts
Query 961 GREATISSYLAKAEDLDEHGRFAEAEQLYITIGMPHKAIQMYDRVGRDDDVLRLVERYHGEHMHETRKRFATQYEERGDL 1040
WD40-rpts
Query 1041 KAAEEQFLKAGDFRSAVNMYKDSEMWSDAYRIAKTEGGENMEKQVLFMWAKSIGGDAAVKLLNKHGMLMEGIDFACETGA 1120
WD40-rpts
Query 1121 FDLAFDLARIGAKDRMGTVHVRLATQLEEEGRLEDASKHYVEGNKPELAVEMFIRDNDWADAERVAKDHCESLLPDVYTG 1200
WD40-rpts
Query 1201 QARRAIEEGDHLRAETFLLRANKPDIILRYFIENEMWPDALRIAQNYLPHQAALIQEEYEKSELRNGARGVDSFVAQAKE 1280
WD40-rpts
Query 1281 WEQQGDWRKAVSALLKINRDSTDNDALIKHSTEKAADLVMKFLMGDEEYIGAALGALDEANCNEKAAELLLLFGQSRQAI 1360
WD40-rpts
Query 1361 NALCRAKQWAKAKQVAQEYLPEMVPEIEKIYKESLKSEGRLGELIDVDVITAIDMMIENDQWDKALDTAKSQNYRPLLDK 1440
WD40-rpts
Query 1441 YVAQYAAILVHRNDLSRVLAVLERYGASANPANFSIYKLLMEETLAKPRFDYTEIARVRNVHLDVYNALQKESSEHFEEF 1520
WD40-rpts
Query 1521 SRALWALHLIAMRTALEEIGDSVPEVQKLCLKQSLSLLRYTDILVADRIFYEAGAAAKDYGSEYESLGFLLLNHYLDLVD 1600
WD40-rpts
Query 1601 AIEEGNGELVDYSPFENSDIPTEVSLPTRQWLESAKHEEMKEWVLASSVDDAHAKELVYDKRGVFEASLKDKRGTAEPCL 1680
WD40-rpts
Query 1681 VTGYPVIESTVRIGSMVAEKDNLNKFLVVIKSNQTENLLNVQNFVAKWAGSPLAISL 1737
WD40-rpts
 10 WD40-repeats found in QUERY=T27B1.1 (Len=1737): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-44 6.06 364.81 0.00075 17.5% 45.08 WD 2: Seg 5 52-94 6.96 402.32 0.00024 22.5% 47.71 WD 3: Seg 8 95-139 4.66 307.31 0.00449 25.0% 52.39 WD 4: Seg 12 142-180 6.48 382.27 0.00044 22.5% 55.84 WD 5: Seg 16 183-221 4.19 287.59 0.00826 5.0% 44.27 WD 6: Seg 20 225-264 4.38 295.65 0.00644 17.5% 51.85 WD 7: Seg 24 271-309 5.53 343.16 0.00148 15.0% 45.89 WD 8: Seg 30 349-387 3.53 260.38 0.01912 5.0% 40.39 WD 9: Seg 38 427-466 5.36 336.08 0.00184 17.5% 43.58 WD10: Seg 42 469-507 4.98 320.58 0.00297 12.5% 54.29Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-44 YL------STI---LPAQDGEAKISNISCSPNGSRAAIACSDRS-VALLD WD 2 52-94 RF------TCKPIDAKYGKKSFTVLCMTFSPDSSRIAIGQSDNV-LFIYK WD 3 95-139 VGTSWNEKKVI---VNKFVQPSAVTCLSWPFDDK-ILVGQLDGK-VRIGL WD 4 142-180 -T------NKC---SSLYKTDETVVSIQTHPKRTSFVSAHQDGS-IILYN WD 5 183-221 -S------RTQ---SKICTLQVPPYNLVFTNHGLVVATSDRRVL-SYTEN WD 6 225-264 -Q------QQF---DYNDQSEKEFSSISCDPTAQNVVVASYDRLRLFSWS WD 7 271-309 -D------EGA---PLEIQNAYTIGALGWKMDGSTIYAGTVCGG-VFSVD WD 8 349-387 -G------LAI---DELKIMGKDRYVIGYTSSSIIIADTESQRF-SELEW WD 9 427-466 TE------LTS---PHLLSVQVSGPDVEEHKKVKKLAYLVDPTT-ISIIN WD10 469-507 -N------GQQ---ESFINHTGAVDWIELNERASKLLYRDKRSK-VTLVD WD40 Template TG------ECL---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |