Input parameters:

  Query = T26A5.2a (Len=838)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T26A5.2a, Len=838):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNASSTSSGRSSRAEVLWADVLSHIPFVKRFTTPDSRKEQKVRILSKNEVDEEDGVQLEQLIQNQEVILCHSSSMNFHQ 80  
WD40-rpts                                                                     (________________

Query       81 QCRGSVVDFEYIEKKVKVTVSSESDFPIWEDTDIWMQALSTPTSSLYAIDANTSVNSELIEDESVVQEQKEQISVNIQDQ 160 
WD40-rpts      _____WD 1____________________)                                                  

Query      161 SDLFRSINGWKLISTRRERHRRMYDGIWKNVYLTQLEMTCIDPIDTEKLLHVQERAPLRLSDDIEEFGDVLVDVIKKKTD 240 
WD40-rpts                                                                                      

Query      241 TKNNVFTITLGLTGFARFHAEIQLSKESTYYLNFDDGYEDDLASLASEEDILSGYQTIQNVDELCDKIGELTVTDVCIKT 320 
WD40-rpts                                                                                      

Query      321 WFDILHNYAYIRLIVTSAKRKLQHFKLLTGHHVIIQSATSDRDTVLAVVSRVMKDGIVLTLQGVKKQTKNFVFSKNELFT 400 
WD40-rpts                                                                                      

Query      401 IQIDHNYEDRLQKLTGKEEEHENLRRELINSDSDIRLHRSWKSNGKQYATFTSKNDAFKKIPFNTKFLLGKCWEAEGVLE 480 
WD40-rpts                                                                                      

Query      481 KKADFIFAIRVADKNFSTPSTMTFEIKFTRNLVRNSKDFELSKAFYYVDFDLAHFVESDHCYSLLNAKSVNGKPDETVVK 560 
WD40-rpts                                                                                      

Query      561 SCPIDEDLVFSVFPFQCGRRAEERRRGYQESQREVQSSTKKPDVKVEKNVKLEAPEKQNKRKDTALNPKEKYCAQKLEKQ 640 
WD40-rpts                                                                                      

Query      641 LNDQTKTPKQKPKQETSAGIKRESTQRPCVIPRTFETSNSKDASNKVPLQSVSEPKILLQDTNSRCAQPRKAVSHEGLKS 720 
WD40-rpts                                                                                      

Query      721 HQQENVLKHLDNKHKFLCFVNIAKRIENDNGNPLVELSIGFDENGGKVQQSPWPLGIRMLLTDGLEKTEVKIQGDVQDTN 800 
WD40-rpts                                                                                      

Query      801 GETVTFMIQQQLSDLDFLNSYKPKKLLACFREHGHNLK 838 
WD40-rpts                                            

1 WD40-repeats found in QUERY=T26A5.2a (Len=838):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    64-110      3.08  242.08  0.03351       20.0%     19.13

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-110    QNQEV--ILCHSSSMNFHQQCRGSVVDFEYIEKKVKVTVSSESDFPIWE

   WD40 Template    TGECLRTLSGHTSGVT-------SVSF--SPDGKRLVSGSEDGTIKVWD