Input parameters:

  Query = T24H7.5b (Len=1454)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T24H7.5b, Len=1454):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTPRPTHLHRRSSSKWVPPSAPLHNPISIFRGRSNRETGSRVIRPNHLFESPRYELNNYRDFTDNRISTTKYTFWNFIP 80  
WD40-rpts                                                                                      

Query       81 LNIWHQVSTKYANLYFIFIAILNWVPFFDAYTRYVGLIPICFVLGTTLIKDGIEDYRRYKFDNQINKKTCHVWDRDRCAF 160 
WD40-rpts                                                                                      

Query      161 RKTEWRYILVGDFVHISNNQDVPADIILLRSSSESGTCYIETCNLDGETSLKQRMVPAKVIDYSKKDSTFKPPDFTGVVT 240 
WD40-rpts                                                                                      

Query      241 CEKPDKSIYTIRAKVEFEPGQSDVIIKENMLLRGSRIKNTTFVEGIVVYAGHDTKVMQNNGRAPHKTSGIEKLTNKFIIA 320 
WD40-rpts                                                                                      

Query      321 CFIMLLLMVLYGAITSAVWVGQHPVDEQIPFILSNTPRPFIEGFIGIGAFFINYQLLVPISLYITVEIIKALQIYFISND 400 
WD40-rpts                                                                                      

Query      401 IQLYDQKSDRAIDCRSLSIPEELGTVTHVLSDKTGTLTENMMIFRNCAFDETDYGSNGSQSNPDKPVKSDELYQRILTSM 480 
WD40-rpts                                                                                      

Query      481 QNPVQKHFFANILLNNSVVVNHIPHTDVLELGNFDGGVYNIGNSCFYDVTEEKYKQKLAAIGKGGVDDDDVSRPDELGLP 560 
WD40-rpts                                                                                      

Query      561 TTSIQFDDRLTVIVEEDTPSDSPAPDASPRDLPETPTPTSPIYRPLSSLSSFSRKLSTVVRRSILRPISDIIPVRKRLIS 640 
WD40-rpts                                                                                      

Query      641 FKQQAMNPYEAESPDELALIEGAALYDYVLLERAATSVTISTPEKAEKRYEILLTLPFDATRKRMSVIVNSQKGPLMYCK 720 
WD40-rpts                                                                            (_________

Query      721 GADSAIISRLSSDSLESKRVQDLKDHLDNYAKKGLRTLCFAMKYISKEDFEDFLDSYRFLMEDATSEREKMLSEKADELE 800 
WD40-rpts      ___________________________________________________WD 1_________________________

Query      801 TNLKLSGVTGIEDRLQDGVPDTLRALRDAGIQVWVLTGDKLETAQNIATSSGLFHPQRSLKVIETETDAEEASESAGLNI 880 
WD40-rpts      __________________________________)                                             

Query      881 IMSPAAIRLAQDGNAHLMEALKKAKTVLCYRMTPSEKATIVNTVKKRIKGNVLAIGDGANDVPMIQAAHVGIGIAGKEGL 960 
WD40-rpts                                                                                      

Query      961 QAAMACDFAIARFKFLSRLLLVHGHWSYYRLANTFLYFLYKNANAVFIIFYYQFYNGASGTNIVDPIWGVIYPIIFTSVQ 1040
WD40-rpts                                                                                      

Query     1041 PVVVGVLDQDYDDQTLMNKPELYVIGRENQLYTWKHFFRDVIDGIYQAAVIYYVAYLTLDNSTSSLWEMGFYIATSSILV 1120
WD40-rpts                                                                                      

Query     1121 NSGHLALQVRYWHWQLVALFSFFILFNFAFFFAECLTAAAAMVPDPPVWMPIHAMGDPRFWYYQFITVIVALCPRQSIEK 1200
WD40-rpts                                                                                      

Query     1201 QNMAELNFIELQCRIMFELAFIAVLVAGAVYVFMTLRKNGFFVTVEPSVTTSPKNLDKPLTVYYKYHLGPYQNVMNVIGE 1280
WD40-rpts                                                                                      

Query     1281 AKQLLASSPTPATFFGIYYDNPEVTDSHFLQSAVGVVFGSDGNDFHSEKYSKDLTDNGFEKLVLPNVERAVQVTQPSTGG 1360
WD40-rpts                                                                                      

Query     1361 FASFLALVWFTYSTIRKYISENKLETTYAVEFYTNTEINVIFPLDNANEFLVKDYQSIDKLESEAAKKRFDSSEEDSESE 1440
WD40-rpts                                                                                      

Query     1441 PEGAEEPATEENEQ 1454
WD40-rpts                    

1 WD40-repeats found in QUERY=T24H7.5b (Len=1454):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   711-835      2.92  235.40  0.04107       27.5%     19.99

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  711-835    SQKGPLMYCKGADSAIISRLSSDSLESKRVQDLKDHLDNYAKKGLRTLCFAMKYISKEDFEDFLDSYRFLMEDATSEREKMLSEKADELETNLKLSGVTGIEDRLQDGVPDTLRALRDAGIQVWV

   WD40 Template    TGECLRTLSGHT-----------S-------------------GVTSVSFSPDGKR----------------------------------------LVSGSE----DG-----------TIKVWD