Input parameters:

  Query = T24E12.5 (Len=678)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T24E12.5, Len=678):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATCVLTIAPPVIEAVAASAVGLSAASATGAGVASAAGVVAASAAGTGAASTAGVVAASAAGVGAGAVGLTLVLPAVLMG 80  
WD40-rpts      (______________________________________WD 1_____________________________________

Query       81 VGAGLIVGSIGLLVLGPPKRRTSNNQTARRTPCSSTNSPRKSESCWYEPEKDHFYVSQKARNSESIRLTANVIPGETLKT 160 
WD40-rpts      _)                                                                              

Query      161 YAELNEILFNQLNENRTGSPVFRKSDSYWYEPEKDHFYVSKEARNSESIRLTANVIPGETLKTYAELNEILFNQLNENRT 240 
WD40-rpts                                                                                      

Query      241 GSPVFRKSDSYWYEPEKDHFYVSKEARNSESIRLTANVIPGETLKTYAELNEILFNQLNENRTGSPVLRIFDSYWYEPEK 320 
WD40-rpts                                                                                      

Query      321 DHFYVSKKARTSESIRLTANVIPGETLKTYAELNEILFNKLNENRTGSPVLRISDSYWYEPEKDHFYVSKKARTSESIRL 400 
WD40-rpts                                                                                      

Query      401 TANVVSGEKWKTFAELKELLGNQLRDANQSKQDSYPRGECNTPEKRNEKNNNFERQQPRKSLQDQHWNVPFEFERDPNNQ 480 
WD40-rpts                                                                                      

Query      481 TGREREDSSTDQFWMSVTTPKNFTYTMVGLANNGREGFLHSLIRHGREFTGFPSNRFHRDILDVVPPSIRQLIKEIRNYS 560 
WD40-rpts                                                                                      

Query      561 NRDRSNEIEKELLSDRSYPATLQLQKKFRDYIQKIVNDESNFLYRRPNTNGQTQVFWKINNEKVLVICLSEDPYFPEAGR 640 
WD40-rpts                                                                                      

Query      641 DSVSPERNIRKIITMFVKSRISVDSMIRADSPFNTHGP 678 
WD40-rpts                                            

1 WD40-repeats found in QUERY=T24E12.5 (Len=678):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-82       3.42  255.88  0.02196       22.5%     17.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-82     MATCVLTIAPPVIEAVAASAVGLSAASATGAGVASAAGVVAASAAGTGAASTAGVVAASAAGVGAGAVGLTLVLPAVLMGVG

   WD40 Template    TGECLRTLS------------------GHTSGVTSV------SFSPDGKRLV--------SGSEDGTIKV----------WD