Input parameters:

  Query = T22D1.3a (Len=534)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T22D1.3a, Len=534):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRPEDFNSLELDNSLTDGETVHEMMAHKAGLTYNDFNILPGFINFGVHDVSLETNITKDLKIKAPLVSSPMDTVTESGM 80  
WD40-rpts                                                                                      

Query       81 AIVMALYGGIGIIHGNFPKPEDQAAEVLKVKRFKQGYVMQPHCLSRDSTAFDMIQIKKKYGYTGAPVTEDGRVGSKLIGM 160 
WD40-rpts                                                                                      

Query      161 VTSRDFDFITMDVAGQKGTPISDTNDVTPTTPITRIMVSVDQLHLGHINDAPELSQKKLKEHRLGKLPIVNDNGELCALL 240 
WD40-rpts                                                                                      

Query      241 CRSDLLKARDYPMASYDSKGQLLCGAAVNTRGESQYTVDRVVEAGVDVLIIDSSNGSSTYQISMLRYIKEKHPHVQVIAG 320 
WD40-rpts                                                                                      

Query      321 NVVTRAQAKLLIDQGADGLRIGMGSGSICITQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLGAS 400 
WD40-rpts                              (_______________________________WD 1____________________

Query      401 AVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAHASSQDRYFTAESDQIKVAQGVSATMKDRGSCHKFIPYL 480 
WD40-rpts      ___________)                                                                    

Query      481 IRGVQHGMQDIGVRSLRDFREKVDNGIVKFERRSTNAQLEGGVHSLHSFEKRLY 534 
WD40-rpts                                                            

1 WD40-repeats found in QUERY=T22D1.3a (Len=534):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   345-412      2.77  229.07  0.04976       17.5%     -7.60

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  345-412    SGSICITQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLGASAVMMGGLLAATT

   WD40 Template    TGECLRTLSGHTSGV---------------TSVSFSPDGKRLV----------SGS---EDGTIKVWD