Input parameters:

  Query = T21E8.3 (Len=1243)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T21E8.3, Len=1243):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENSENDVLIPVENEKKTTNWTKFVKVVWQCTSKWEKFLFVIGVVSAICTGLTQPFMSYTFGEVSQAFVRITAAVNNASL 80  
WD40-rpts                                                                                      

Query       81 DPSDLEKAYEMFHADMNNVVIHFGLVGCAFMFFGFIQFSLFKYIGDNTTYRLRHKFILRLLKKDAKYFDTISTGYLSTVL 160 
WD40-rpts                                                                                      

Query      161 NDNLERFREAFNEKIAFIICFSTDFAIGTALAFYTSWTLASYGSVFAFGIVISGLLNSTSMMKSNEKQSMHYSNAGAIAF 240 
WD40-rpts                                                                                      

Query      241 QALCSFKTVISLNGQTQELEKYSAELKEGEKFGSRRAFFLATSRGLSHFFCNALNGTILYVGADLIYNKTMNTVAIVTLF 320 
WD40-rpts                                                                                      

Query      321 HYMLFSAFSLGEAFLHISYLLNAINSATPIFDVLTSDDDMIENNQDNEQTDSNKTIQGMLSFNNVKFAYPSRPDVDILRG 400 
WD40-rpts                                                                                      

Query      401 ISFDVKQGECIALVGASGSGKSTIVQLLLHFYNIQSGTIKIGDSHLHDINLKQLRNAIGVVSQEPVLFNTTIEENIRFGN 480 
WD40-rpts            (__________________________________________________________________WD 1___

Query      481 PNATSSEIYEALRKANAYDFVCNIKDGLKTIVGERGAQLSGGQKQRIAIARVLVKNPAILLLDEATSALDSASERAVQLA 560 
WD40-rpts      ______________________________________________________________)                 

Query      561 LKKASEGRTTIIIAHRLSTIRHCDKIMVMSNGKIAEVGSHEELISMDREYSNLVRAQFFDSQSVEEDINGQGAEEVIQKT 640 
WD40-rpts                                                                                      

Query      641 PPNLNDGEPLEELLKETSSDIEIKSNIWEVLRECRPDAFLLSMAVIGSAIQGCNFPILSQIIVQTYKAYAMDGENILTYG 720 
WD40-rpts                                                                                      

Query      721 HFWAAMFLVLGVIRPITLYCQFFFFGKVSEKLSTRLRIKSFQHLLSLPCAFYDDPKHSPTRLVNRLNTDPSNIKAAVDAR 800 
WD40-rpts                                                                                      

Query      801 LGSLLMSMVSFSLAILIACYYSWKLTLQVVLFFPVLYYAKFLYKKTTTISIKEDSVAFENSNKIAIEVLDNMKTVKALNM 880 
WD40-rpts                                                                                      

Query      881 EARVINLVMEYLAVLKTSYPRRSVVMGLANGFSAGCSQIVYAISFKFGTYLILQKEVIPMDMYLSLITLSYTSNMAGSAI 960 
WD40-rpts                                                                                      

Query      961 SYMPDFRKAIHSAGLIFNLFTYPATMPFNSDTGSRSITKGEVNGENVKFHYHQRPDYTVLDSVNLKVEAGKTLAIVGPSG 1040
WD40-rpts                                                                                      

Query     1041 SGKSTIISLLEMFYRADQGFIKIDNDNVENINLDHLRSNLGLVSQGPVLFNCSIRDNILYGLTRNISQTEIENALQIANA 1120
WD40-rpts                                                                                      

Query     1121 FNFVFQLPQGLDTIVGDRGAQLSGGQKQRIAITRAILRNPKLLLLDEATSALDTESEKIVQNALDTASERLSTIVVAHRL 1200
WD40-rpts                                                                                      

Query     1201 STIINADSIAVLRNGKVVEQGTHNQLLAVKGDYWRLVQHQKSS 1243
WD40-rpts                                                 

1 WD40-repeats found in QUERY=T21E8.3 (Len=1243):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   407-543      2.78  229.32  0.04939       30.0%      9.86

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  407-543    QGECIALVGASGSGKSTIVQLLLHFYNIQSGTIKIGDSHLHDINLKQLRNAIGVVSQEPVLFNTTIEENIRFGNPNATSSEIYEALRKANAYDFVCNIKDGLKTIVGERGAQLSGGQKQRIAIARVLVKNPAILLLD

   WD40 Template    TGECLRTLSGHTSG-------------------------------------VTSVSFSP-----D-------GKRLVS------------G----------------------S--------------EDGTIKVWD