Input parameters:

  Query = T19H5.2 (Len=358)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T19H5.2, Len=358):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSVKDQEVMLLISDRLLQGGKYNFKNIFRKDDRDFKTRKVIIVLVICLIFIITDLFIIRSHLHQISSRNQDTNSISALL 80  
WD40-rpts                                                                                      

Query       81 NKQGVTFVKGMSSLKYKIFAFAQLNTNGSLQFESAISKQKFLNLNRKSKHINNNVNRILSIGGTNYSEKLSIMLQDLKKT 160 
WD40-rpts                              (_____________________________________WD 1______________

Query      161 RRFIMSIIRFLKDNELDGVELLWNRNTEETLYCELLQHLKMGLEKQEKQYSISLRVPQTGIGKWHIGCELEDQENADSIN 240 
WD40-rpts      _______________________)                                                        

Query      241 LISMAEYENQLFGSGGVIRISEAFNTAWEMKYHACNSNQSSKFNLVIPTIEQTEQIDMQYVWNPEKKEIQRFNSSTKTEY 320 
WD40-rpts                                                                                      

Query      321 TKLQMGGVSIWSRDMDYHNNIQLDSYFFERICSQELGK 358 
WD40-rpts                                            

1 WD40-repeats found in QUERY=T19H5.2 (Len=358):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   105-184      2.86  232.66  0.04464       12.5%     15.13

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  105-184    NTNGSLQFESAISKQKFLNLNRKSKHINNNVNRILSIGGTNYSEKLSIMLQDLKKTRRFIMSIIRFLKDNELDGVELLWN

   WD40 Template    TGECLRTLSG-------------------HTSGVTSVSFSPDGKRL---VSG------------------SEDGTIKVWD