Input parameters:

  Query = T18D3.1 (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T18D3.1, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVRIDLSSNASVRLLSVNDENTACAYLANLYIPIFSLDSGKVIRRYEVPNQIAGIHFSFNKKSVIYAVDDSFGLHTFDF 80  
WD40-rpts                                            (__________________WD 1_________________) 

Query       81 RTDSKKKHRMNPESENHNVVCTALSSNSTTIAVASSEFGGGILDVRGSRRREHHHHVVSLYDLRYPNDPITSYFKRLKSS 160 
WD40-rpts                                                    (___________________________WD 2__

Query      161 VTSMEFYLNGNDLILGDESGSIKSFDCQLRDEDNAVRWERWATGPISKVGVINKRIVYGISRQSQASVFVDSKGKLEVLY 240 
WD40-rpts      _________________________)                                                      

Query      241 GSVTESADDPVVGTSKAYYKDPEWCIGLIKGVNDDIPLVGVHGVKKKKIISMTAMNQDGVRQEKPMLSYKGHKGEVKCMA 320 
WD40-rpts                                                (__________________________WD 3_______

Query      321 ATKDLLLTGGEDGKVIVQIANFKNPKFGDDNINHHRLTLNRGNLAELKDKGLEKDDEAISESDDSESDDGSKPSTSASAS 400 
WD40-rpts      __________________)                                                             

Query      401 VSSSSKHKKDKHDIPSTSSAASTSSSSSSKHETKEERKARKEKERERAEKKAKKEKDGHREEEKPKKKDKKHETEEERAE 480 
WD40-rpts                                                                                      

Query      481 RKRKEKKEKERQERKEKEHDEQKKRHRDNEEGAGSSSKRSKAP 523 
WD40-rpts                                                 

3 WD40-repeats found in QUERY=T18D3.1 (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    39-79       2.93  235.83  0.04053       12.5%     38.53
  WD 2:  Seg 11   127-186      4.26  290.78  0.00748       40.0%     25.51
  WD 3:  Seg 21   283-339      2.77  228.95  0.04995       27.5%     37.23

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-79     DSGKVIRRY-------------------EV---------------------PNQIAGIHFSFNKKSVIYAVDDSFGLHTFD
   WD 2  127-186    -GSRRREHH-------------------HHVVSLYDLRYPNDPITSYFKRLKSSVTSMEFYLNGNDLILGDESGS-IKSFD
   WD 3  283-339    GVKKKKIISMTAMNQDGVRQEKPMLSYKGH---------------------KGEVKCMAATKD--LLLTGGEDGK-VIVQI

   WD40 Template    TGECLRTLS-------------------GH---------------------TSGVTSVSFSPDGKRLVSGSEDGT-IKVWD