Input parameters:

  Query = T10E9.2 (Len=720)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T10E9.2, Len=720):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPKRKQLRRNSSSIDSNSLQQQNLLHVCGYCSKLMGNDEKEHLEHAMSHQNEVTQCRTCCIPVNKEETEDHLKRIHACN 80  
WD40-rpts                                                                                      

Query       81 YRHIKFSIDNSLIELRIAAGKSYSNFWGIRLSSTDSTLNSFSSNSARWWQNFKNGRSLGTFRILNSKFSWKCPMCEGKSA 160 
WD40-rpts                                                                                      

Query      161 VNFNETISMRTYALTHLEHHHFEEVMVSVPGFFEFEWYHLNEETDFDVRALMHIRQQRIMCKGRSYLTFYTINLSKMENG 240 
WD40-rpts                                                                                      

Query      241 ENFLTKLKKRSGMEKEEVRYCLVCCCLVSSETIKQHFRLSSHSCLDPIASSSSFTHVQPDPKEVANEAGENVNNAENPEE 320 
WD40-rpts                                           (_____________________________WD 1_________

Query      321 EEVYTFEFPKELFLYSNVFKNLRKDEFKWRCCLCPRAHAHIFTTQLIMRMYALRHIDQHHKYLFTEEFMNYEWLSAKHEI 400 
WD40-rpts      ____________________)                                                           

Query      401 RASFDIRTFTPLQYTIKGESTFNATDPNDYTLPQQYFFIPKDFINETVICGFCYRSFNKIDFLLHIVLHGFRVVTRETAK 480 
WD40-rpts                                                                                      

Query      481 LRPASYTETANELMGQNNYSDGGLDDEPHNILSVDGKRLKSKMDLLAKRSYLNVPRFSEVTTPGKSERDTDGEIYTPSGR 560 
WD40-rpts                                                                                      

Query      561 RSAMNARKLLTETFKVLQDNFRNRKDTWNESSCSSSSSSDESNSEDDRFERNLLLEATTKDERRERSKSTELKVKDLSKM 640 
WD40-rpts                                                                                      

Query      641 RPAEVREWVKREAEKRGVDWKDQSSSSEGEDMESETTTERIAGNNWNNMRLKDIKELVRTAAKRKKIDISNDSSSDSDDC 720 
WD40-rpts                                                                                      

1 WD40-repeats found in QUERY=T10E9.2 (Len=720):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   278-341      2.78  229.47  0.04917       15.0%      0.25

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  278-341    RLSSHSCLDPIASSSSFTHVQPDPKEVANEAGENVNNAENPEEEEVYTFEFPKELFLYSNVFKN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-------------GKRLVSGSEDGTIKVWD-----------