Input parameters:

  Query = T08B2.7c (Len=697)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T08B2.7c, Len=697):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFFHDVHGRFHREARQWALLRFHQKEMLSRLVHQSSSTLRTNLSFRLFSQSAPAMQTTHRVEKQGDVAVVKIDLPNTKEN 80  
WD40-rpts                                                                      (_______________

Query       81 VLNKALFAEMKATLDKLQSDESIKSIVVMSGKPNSFVAGADIQMIKAEGTATATETLSREGQEQFFRIEKSQKPVVAAIM 160 
WD40-rpts      ___________WD 1_________________________)                                       

Query      161 GSCMGGGLELALACHYRIAVNDKKTLLSLPEVMLGLLPGAGGTQRLPKLTTVQNVLDLTLTGKKIKADKAKKIGIVDRVI 240 
WD40-rpts                                                                                      

Query      241 QPLGDGLGPAAENTHKYLEEIAVKAAQELANGKLKINRDKGFMHKATQAVMTNSLFLDNVVLKMAKDKLMKLTAGNYPAP 320 
WD40-rpts                                                                                      

Query      321 LKILDVVRTAYVDPKKGFEAEAKAFGELSQTFQSKALIGLFDGSTDAKKNKYGKGLPVNEIAVVGAGLMGAGIANVTIDK 400 
WD40-rpts                                                                                      

Query      401 GIRTVLLDANPAGVERGQNQIATHLNKQVKRRKINKLEKERIYNHLVPTIDYSAMKNADVVIEAVFEDLQLKHKVIKQIE 480 
WD40-rpts                                                                                      

Query      481 SVVGPNTIIASNTSALPIKDIAAASSRPDKVIGMHYFSPVEKMQLLEIITHDGTSKETLATAAQLGLKQGKLVVVVKDCP 560 
WD40-rpts                                                                                      

Query      561 GFFVVRCLGPMTAEIMRLLQEGVDPAELDKLTTKFGFPVGAATLADEVGLDVAEHVAQFLGKALGPRLGGGSADLLSELV 640 
WD40-rpts                                                                                      

Query      641 KAGHKGRKTGKGIFVYGDGKKGSKKVNDEATKLLQKYKLTPNASVRPSNPSCLSFRQ 697 
WD40-rpts                                                               

1 WD40-repeats found in QUERY=T08B2.7c (Len=697):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    65-121      2.91  234.94  0.04164       10.0%     18.46

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   65-121    GDVAVVKIDLPNTKENVLNKALFAEMKATLDKLQSDESIKSIVVMSGKPNSFVAGAD

   WD40 Template    TGECLRTLSGHTSGVTSVS-----------------FSPDGKRLVSGSEDGTIKVWD