Input parameters:

  Query = T07E3.4a (Len=427)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T07E3.4a, Len=427):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELQRKRSFNTSTVSHDFRKEFKGSFLETKYRKVKKDGKKNGLKSIAEWLFTKTSAKKNGAPVTSSAEKVCANMVTVKEK 80  
WD40-rpts                                                                                      

Query       81 PTYFDRIPNEILFEILENCKSTEPSTVLAARRLSRRFNACMDHIADVKINVLSRLVISGLGKKGIEMRWVSYEGQKTKTT 160 
WD40-rpts                                                                              (_______

Query      161 VVPWSTVRSPRSSFEFNFRRFAIQRILLKNVPLSDDLIEFLRRQFQYADLTKLIQLSLSQVDFSLSNCLSLHRFLAPVAK 240 
WD40-rpts      _____________________________________WD 1_______________________________________

Query      241 TLEIFEITQCTGMRADSVTDEHLAQLDAPTVRRICIDGVRFASNATRNLDIGDGALRHFARLGAFPTMILDRCAVTTNTV 320 
WD40-rpts      _____)                                                                          

Query      321 CDYTKEWFEQCNESEKQLRSQVCTVKRCPKVKGSQFESECLRRGLRCKNRRGSGSLTLYNVQEENTKREFTIALAALEDK 400 
WD40-rpts                                                                                      

Query      401 ELAEKLKISEQNCNNNNLLTVPPSFQL 427 
WD40-rpts                                 

1 WD40-repeats found in QUERY=T07E3.4a (Len=427):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   153-246      3.09  242.44  0.03314       22.5%      8.62

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  153-246    EGQKTKTTVVPWSTVRSPRSSFEFNFRRFAIQRILLKNVPLSDDLIEFLRRQFQYADLTKLIQLSLSQVDFSLSNCLSLHRFLAPVAKTLEIFE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRL-------------VS-----------G-------------------SED-----------GTIKVWD