Input parameters:

  Query = T06G6.3a (Len=511)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T06G6.3a, Len=511):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTESWSQVFNNPISAADYFFAESLKLQQRNNLLEMEVVEEKAANTMLRNDLKNCKGMLKEQEELLAAEKRKSPVSWERSL 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 TPDKKNRDDLMDSVVLERMNIVPGDQESEDTTVYLSRGICMMHREWMLERKEQQDKLLLLSGSLEMERQQTAETCEIITM 160 
WD40-rpts      _________________________________________WD 1___________________________________

Query      161 LEAELEQEQADAKKKQKSLNREIEKLKERIEKMAAEEPEQEAKKDVCKRNVNHFKLDETCPIQIIKSERIKVAQNEIREL 240 
WD40-rpts      ________________________________________________________________________________

Query      241 NKQLDAEQDPLKKLEYMDSIREKASLIAQEAMDHAELLNSVLDYERDAHTEIRHRQLRKQKKEIEKLIGEWKVKEKEHQN 320 
WD40-rpts      ____)                                                                           

Query      321 DMCKLAQQILDQALEFKASNKARAKEHPASSKSEEQSSNKEILSSLEAKLKKEQDDHLVTTNQLNYQSAILNEAQSEIKK 400 
WD40-rpts                                                                                      

Query      401 LEQLILKNSEELESLQTWKSDSTIREQNLMDENCKQYVDICDLQNTIRGLRFADTRWMEEHLKLNEQVDSMKQGFELVDT 480 
WD40-rpts                                                                                      

Query      481 GYGPTQGTFGVVEKKKAEEEVTVEEEDYEEW 511 
WD40-rpts                                     

1 WD40-repeats found in QUERY=T06G6.3a (Len=511):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-245      4.18  287.34  0.00832       37.5%     17.18

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-245    MTESWSQVFNNPISAADYFFAESLKLQQRNNLLEMEVVEEKAANTMLRNDLKNCKGMLKEQEELLAAEKRKSPVSWERSLTPDKKNRDDLMDSVVLERMNIVPGDQESEDTTVYLSRGICMMHREWMLERKEQQDKLLLLSGSLEMERQQTAETCEIITMLEAELEQEQADAKKKQKSLNREIEKLKERIEKMAAEEPEQEAKKDVCKRNVNHFKLDETCPIQIIKSERIKVAQNEIRELNKQLD

   WD40 Template    TGE--------CLRT----------------L-----------------------------------------------------------------------SGHTSGVTSVSFSP-----------------DGKRLVSGS-----------------------------------------------------E-------------------DGTIKVW---------------------D