Input parameters:

  Query = T06E6.1 (Len=431)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T06E6.1, Len=431):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDCYVGATTGALKGAILKENTFQNLNEIKSLDPKSDEITSMIWNDEQQTEILIARVNRDLQLLGIEENELVSILTVTGGT 80  
WD40-rpts                              (_________________WD 1_________________)   (____________

Query       81 GPIKGLHKADEKIVTCVESGELQIWNDKSEILSEWKTGPGVAVMRGSTEKPEIVTGGMKNLLKTWNLETGQQTWSAKNVP 160 
WD40-rpts      _____WD 2________________)(_________________WD 3_________________)         (____

Query      161 PDMLGLEIPIMITDARFIPGQNTILEATKLHEMRLYDPRAQRRPVKKIPFMENPIMCTSLTYKTNQILAANSIGEMGLFD 240 
WD40-rpts      ______________WD 4__________________)    (_________________WD 5________________)

Query      241 LRSKVHPMCKFKGQAGSIRSITAHPTLPLAASVGIDRFLRVHDLQSRKLIHKIYCKTRLNRVLLRDNLSILNDKKPASKK 320 
WD40-rpts          (_________________WD 6________________)                                     

Query      321 EINEDETEYGNMTKDGYRSENEDDEDDDDVIEEDDVWGVMEPVKRAKKSSDDDVEEIQITSETIAVPSKNSQKLKRKNVL 400 
WD40-rpts                                                                                      

Query      401 EADEIKEEEGDSDEAEVKKTTKKVLKKKKRV 431 
WD40-rpts                                     

6 WD40-repeats found in QUERY=T06E6.1 (Len=431):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-64       6.32  375.59  0.00054        7.5%     52.99
  WD 2:  Seg  7    68-106      8.39  461.44  3.8e-05       15.0%     54.33
  WD 3:  Seg 11   107-146      9.51  507.36  9.0e-06       17.5%     54.78
  WD 4:  Seg 16   156-197      6.70  391.45  0.00033       12.5%     37.75
  WD 5:  Seg 19   202-240      7.93  442.16  6.8e-05        7.5%     55.83
  WD 6:  Seg 23   245-283      8.27  456.12  4.4e-05       17.5%     55.65

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-64     -LNEIKSLDPKSDE--ITSMIWNDEQQTEILIARVNRDLQLLG
   WD 2   68-106    -NELVSILTVTGGT--GPIKGLHKADE-KIVTCVESGELQIWN
   WD 3  107-146    DKSEILSEWKTGPG--VAVMRGSTEKP-EIVTGGMKNLLKTWN
   WD 4  156-197    AKNVPPDMLGLEIPIMITDARFIPGQN-TILEATKLHEMRLYD
   WD 5  202-240    -RRPVKKIPFMENP--IMCTSLTYKTN-QILAANSIGEMGLFD
   WD 6  245-283    -VHPMCKFKGQAGS--IRSITAHPTLP-LAASVGIDRFLRVHD

   WD40 Template    TGECLRTLSGHTSG--VTSVSFSPDGK-RLVSGSEDGTIKVWD