Input parameters:

  Query = T05D4.3 (Len=486)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T05D4.3, Len=486):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRENQKPQKKYSPDSSTNHIMRTSQPTMEPSDTIRYIRRKEEIEQVSRPAPPPYIGQAIPRVKPIRTFQKGNNSVGENS 80  
WD40-rpts                                                                                      

Query       81 RPTSRRFDTFGENALETIYDQFKFLDESEEPATQTPTSVNSSRPIMARNNKKRDGNRRPAMLIYCILPLLELLAAIAIII 160 
WD40-rpts                                                                                      

Query      161 TSFLTDRKNWEPTPSEKSDTSPTTEAMRSLSIQNALSTIIPAFFQIISSFFGFWPMFPSFLRRSAQLLHIFFNSVVITLW 240 
WD40-rpts                                                                                      

Query      241 FNAIYDFFYKVAMEHVLQPEATDEKFVINLIVGCFIYFATVVLSAITLVVTVFNIYLMRKTIQKSLTAISVSLGTVLFSL 320 
WD40-rpts                                                                                      

Query      321 STTVIGVFMAQTNLTGTRSLSDSSTMYAYGLKESIVFVFVVIVAIFSLIVATQNCSQMMLAAIIGQGICILSISSELFTS 400 
WD40-rpts                                (______________________________________WD 1___________

Query      401 ERISAIFNELKSFETAGSTIEIGIVLLNGCAVVSLLVLVLQLIVFVFCVSPISTLSASSIGSTNSLLLLDNNRNPSGSNR 480 
WD40-rpts      __________________________)                                                     

Query      481 VERTAF 486 
WD40-rpts            

1 WD40-repeats found in QUERY=T05D4.3 (Len=486):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   347-427      3.07  241.47  0.03413       20.0%     16.67

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  347-427    YAYGLKESIVFVFVVIVAIFSLIVATQNCSQMMLAAIIGQGICILSISSELFTSERISAIFNELKSFETAGSTIEIGIVLL

   WD40 Template    TGECLRTLSG-----------------HTS----------GVTSVSFSPDGKR--------------LVSGSEDGTIKVWD