Input parameters:

  Query = T05A8.5 (Len=378)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T05A8.5, Len=378):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKFGKLVHYVQHKISGTYTQISTLDPNETVVNQLQRSRSTHGKIAKPMVGRAGHVDTVNNLTVIRAGMILSGGKDGRAV 80  
WD40-rpts      (_________________WD 1________________)      (________________WD 2______________

Query       81 LTNTDSGEIHNMWSNSCEINKICYRNFIAKHSLIAAGRNGTLTHWMFNHEPGDLPNVVFDGHKFGVTGVVSINENQFMSG 160 
WD40-rpts      __)(___________________WD 3__________________)(___________________WD 4__________

Query      161 SRDCSVKIWDLESAKCVRTQTINRNLVTHMAYNGNLVAQTSEDKSVRLWDPRNASVVTEFPRKRHIQMFCEFDGANRFFS 240 
WD40-rpts      _________)   (________________WD 5_______________)   (___________________WD 6___

Query      241 CSNGFNNDGCEITSYDVRNPRQSREARGHEGNVTSLSIVQMDQTKRLLASVSADRQIRLWKIEEDGQAVLKPIWNEDVPL 320 
WD40-rpts      _______________)   (__________________WD 7__________________)(__________________

Query      321 EADNLQVCSYPDGHIIVSGGKGRLIHYQAKLTAQRVILDVQLIQQHSMAMSGSSHALH 378 
WD40-rpts      ___WD 8_____________________)                             

8 WD40-repeats found in QUERY=T05A8.5 (Len=378):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       2.92  235.40  0.04107        7.5%     13.27
  WD 2:  Seg  3    46-83       7.37  419.19  0.00014       20.0%     50.94
  WD 3:  Seg  7    84-126      7.08  407.12  0.00020       12.5%     54.64
  WD 4:  Seg 11   127-170      7.64  430.36  9.9e-05       35.0%     51.01
  WD 5:  Seg 15   174-210      7.77  435.76  8.3e-05       27.5%     54.14
  WD 6:  Seg 19   214-256      6.42  379.94  0.00047        7.5%     51.66
  WD 7:  Seg 23   260-301      8.15  451.18  5.2e-05       32.5%     55.18
  WD 8:  Seg 27   302-349      6.65  389.51  0.00035       25.0%     55.23

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -ME-----KFGKLVHY----VQHKISGT---YTQ--ISTLDPNET----VVNQLQRSR
   WD 2   46-83     -AK-----PMVGRAGH----VDTVNNLT---VIR--AGM-ILSGG----KDGRAVLTN
   WD 3   84-126    TDS----GEIHNMWSN----SCEINKIC---YRNFIAKHSLIAAG----RNGTLTHWM
   WD 4  127-170    FNHEPGDLPNVVFDGH----KFGVTGV----VSI--NENQFMSGS----RDCSVKIWD
   WD 5  174-210    -AK-----CVRTQTIN----RNLVTHMA---Y----NGNLVAQTS----EDKSVRLWD
   WD 6  214-256    -AS-----VVTEFPRK----RHIQMFCE---FDG--ANRFFSCSNGFNNDGCEITSYD
   WD 7  260-301    -PR-----QSREARGH----EGNVTSLSIVQMDQ--TKRLLASVS----ADRQIRLWK
   WD 8  302-349    IEE-DGQAVLKPIWNEDVPLEADNLQVC---SYP--DGHIIVSGG----KGRLIHYQA

   WD40 Template    TGE-----CLRTLSGH----TSGVTSVS---FSP--DGKRLVSGS----EDGTIKVWD