Input parameters:

  Query = T05A10.1m (Len=2232)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T05A10.1m, Len=2232):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFAPGSGGGGAPPGQQPAQMMMPQNISAETYHRLNQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQHVQQQ 80  
WD40-rpts                                                                                      

Query       81 QQSQQQQQQVASQQNQPQLQMNAQILQALSTPQGQNLVNMLLMQQALNAQQTDTQNPQQIMQHQLAQQQAQQAQQAQQAQ 160 
WD40-rpts                                                                                      

Query      161 QARQQAEQQAQAQARHQAEQQAQQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQLQQ 240 
WD40-rpts                                                                                      

Query      241 QQLQQQQLQQQQLQQQQLQQVLQISQAQQQAQQAQHVQSRQMQPSQQSQVQAQLQQQQQLQQQQAQQLSQQQAQQQQQLQ 320 
WD40-rpts                                                                                      

Query      321 QLQLQQFLQQQQQLHQQRAAAQQAQAQNNASQQRPSVASTPALSSTPQLNDLTQTMQAQLQQQLLLQQQQAQAQQAQQAQ 400 
WD40-rpts                                                                                      

Query      401 QAQLAQQAQQQQQGQSQNRTVSQALQYIQSMQLQQRADGTPNAESQEERLAQMLNEQQQRMLQNQAREAQHRQLLISSTP 480 
WD40-rpts                                                                                      

Query      481 APRGGITMGTPIGIARREEQPVPSTVAVTTAPAAVRTPVAVPPMKQNSNPSMNPSSTSTSASATSSHQILAPSLSKPLEQ 560 
WD40-rpts                                                                                      

Query      561 PSSSKAASSGNESMSDHISRIISENEVILQGDPVIRKKRPYHRQIGAQSSVDHDSNSGGSTRTSPGPKDSRMLQAASRSQ 640 
WD40-rpts                                                                                      

Query      641 SLFELSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVVCGKKKELEKAQIAQEGNPHSALKR 720 
WD40-rpts                                                                                      

Query      721 RHTHQDATLAMHSPLAAHTPSNMPGPSEPAIKLKKDDSTELDGTSKPDALQSSSSFPRSLPKEWEQHMLTLQNLAAIIPP 800 
WD40-rpts                                                                                      

Query      801 FVQAFLAKVLQTKLTMVSSGTLTHIYENYNISPICVKQFLHFASQLTDQQLEEMTVESEKQYLENAEEYQAKGIIQALPC 880 
WD40-rpts                        (___________________________________________________WD 1______

Query      881 DNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHHCSGKRDNKDPSKNFVMIKLLHANGKDITEIPMKAETDLDECNARFVY 960 
WD40-rpts      _____________________________________________)                                  

Query      961 QMREFQKINNMNDRLIEVLKTDPAAAATPLFQVAREQSASVKFLIRQTGMVHLTIVASVAKRLGMSSMQQDVPESNQIPN 1040
WD40-rpts                                                     (________________________________

Query     1041 GIIAFDGVQIKQEPEDPPGDDDDDDDDCIIEVVDEDQKQHIAMLTAAASGQDIGIGGQFQKVTQNLEPAIVNQQSIVNHG 1120
WD40-rpts      _____WD 2_____________________________________)                                 

Query     1121 DSIVNNASIPIANNAPVQIVQNGGPMQHEVVAMPVQLKLEDLRLEPQTSGDTDKPYWLVINGDIGGRPSFMTTAGMTSRT 1200
WD40-rpts                                                                                      

Query     1201 HRTRNITSETYVTVPRQQPMFAVQDGTLSMYAKWNVPVHNDAETKMNLSFMGMVSLRRRTGQQKFFKYTTANKDQGHYRM 1280
WD40-rpts                                                                                      

Query     1281 THSSFWDISTKIRDRQASMSEEKTPEESVDYDAQFIERLVGGTYTNTDLQGPSNAPVTIPVLVAPEDSTSAEPSTSGQSL 1360
WD40-rpts                                                                                      

Query     1361 LMRSPRPQSPPLRDIKMDLSDDDYSATDLATTCKLEPKQESFEDVKDVKRENSPDARPTVIISDDAGRIRRERFANKYIS 1440
WD40-rpts                                                                                      

Query     1441 RIRPKHDQIIGGHRTDEVYVYVRGRGRGRYICDRCGIRCKKPSMLKKHIKSHTDVRAFNCTACNFSFKTKGNLTKHLSSK 1520
WD40-rpts                                                                                      

Query     1521 THQRRISNIQAGNDSDGTTPSTSSMMNMDDGYHRNQPLFDDYDNNSSDEEDYDHLNRMQAEHKFKFGQEHILFERTAHTP 1600
WD40-rpts                                                                                      

Query     1601 PTRWCLVEAQNDHYWPSPDRRSCMSAPPVAMQRDFDDRAMTPVSGANSPYLSQQVHSPMSTSSQSNIILDIPNNQKSNCS 1680
WD40-rpts                                                                                      

Query     1681 SVSNVSPSNSQNFQSLSTVPTCASSSSNVLVPNVNFLQKDETLKCDQCDRTFRKISDLTLHQHTHNIEMQQSKNRMYQCS 1760
WD40-rpts                                                                                      

Query     1761 ECKIPIRTKAQLQKHLERNHGVHMDESVTACIDPLASTQSVLGGPSTSNPRSFMCVDCDIGFRKHGILAKHLRSKTHVMK 1840
WD40-rpts                                                                                      

Query     1841 LESLQRLPVDTLSLITKKDNGACLNDIDTTDCEKARISLLAIVEKLRNEADKDEQGSVVPTTSIPAPQPVALTPEMIRAL 1920
WD40-rpts                                                                                      

Query     1921 ANAQTPVTASMTNTPSTAQFPVGVVSTPSVFPTPNPSSPLESSSMQFRKKAVLDSATHANDMPRTILRISEIPSSLPVNH 2000
WD40-rpts                                                                                      

Query     2001 QLHRDLSFLAHTTSRSESSITSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAALHPLSTDKAH 2080
WD40-rpts                                                                                      

Query     2081 ASESLSDRLHNKRPRPIPDNTKCQICADEFSTPIELQVHLHVDHVRMMDGAEYKCPRKFCGLNYESLDSLRAHVTAHYET 2160
WD40-rpts                                                                                      

Query     2161 DRQKLLEEKVLLAEADFPIDNSKIEKLNSPKKESMNKFTTPFKAISDHHELYAQTQQGAGSSTSNQSPKAAN 2232
WD40-rpts                                                                              

2 WD40-repeats found in QUERY=T05A10.1m (Len=2232):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   819-926      2.99  238.32  0.03757       15.0%      0.66
  WD 2:  Seg  8  1008-1087     2.89  234.20  0.04260       30.0%     15.54

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  819-926    SGTLTHI----------YENYNISPICVKQFLHFASQLTDQQLEEMTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHHCSG-----------------KRDNKDPSKN-------------
   WD 2 1008-1087   TGMVHLTIVASVAKRLGMSSMQQD---------------------------------------VPESNQIPNGI-------------------IA----------FDGVQIKQEPEDPPGDDDDDDDDCIIEVVDEDQKQHIAMLTAA

   WD40 Template    TGECLRT----------LSGHTSG---------------------------------------VTSVSFSPDGK-------------------RL----------VSG-----------------SEDGTIKVWD-------------