Input parameters:

  Query = T05A10.1j (Len=1509)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T05A10.1j, Len=1509):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSHQAIGISNNFQQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQHVQQQQQSQQQQQQVASQQNQPQLQMNA 80  
WD40-rpts                                                                                      

Query       81 QILQALSTPQGQNLVNMLLMQQALNAQQTDTQNPQQIMQHQLAQQQAQQAQQAQQAQQARQQAEQQAQAQARHQAEQQAQ 160 
WD40-rpts                                                                                      

Query      161 QQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQLQQQQLQQQQLQQQQLQQQQLQQVLQ 240 
WD40-rpts                                                                                      

Query      241 ISQAQQQAQQAQHVQSRQMQPSQQSQVQAQLQQQQQLQQQQAQQLSQQQAQQQQQLQQLQLQQFLQQQQQLHQQRAAAQQ 320 
WD40-rpts                                                                                      

Query      321 AQAQNNASQQRPSVASTPALSSTPQLNDLTQTMQAQLQQQLLLQQQQAQAQQAQQAQQAQLAQQAQQQQQGQSQNRTVSQ 400 
WD40-rpts                                                                                      

Query      401 ALQYIQSMQLQQRADGTPNAPSLSKPLEQPSSSKAASSGNESMSDHISRIISENEVILQGDPVIRKKRPYHRQIGAQSSV 480 
WD40-rpts                                                                                      

Query      481 DHDSNSGGSTRTSPGPKDSRMLQAASRSQSLFELSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQ 560 
WD40-rpts                                                                                      

Query      561 AHEVVCGKKKELEKAQIAQEGNPHSALKRRHTHQDATLAMHSPLAAHTPSNMPGPSEPAIKLKKDDSTELDGTSKPDALQ 640 
WD40-rpts                                                                                      

Query      641 SSSSFPRSLPKEWEQHMLTLQNLAAIIPPFVQAFLAKVLQTKLTMVSSGTLTHIYENYNISPICVKQFLHFASQLTDQQL 720 
WD40-rpts                                                     (________________________________

Query      721 EEMTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHHCSGKRDNKDPSKNFVMIK 800 
WD40-rpts      ___________________WD 1___________________________________________________)     

Query      801 LLHANGKDITEIPMKAETDLDECNARFVYQMREFQKINNMNDRLIEVLKTDPAAAATPLFQVAREQSASVKFLIRQTGMV 880 
WD40-rpts                                                                                      

Query      881 HLTIVASVAKRLGMSSMQQDVPESNQIPNGIIAFDGVQIKQEPEDPPGDDDDDDDDCIIEVVDEDQKQHIAMLTAAASGQ 960 
WD40-rpts                                                                                      

Query      961 DIGIGGQFQKVTQNLEPAIVNQQSIVNHGDSIVNNASIPIANNAPVQIVQNGGPMQHEVVAMPVQLKLEDLRLEPQTSGD 1040
WD40-rpts                                                                                      

Query     1041 TDKPYWLVINGDIGGRPSFMTTAGMTSRTHRTRNITSETYVTVPRQQPMFAVQDGTLSMYAKWNVPVHNDAETKMNLSFM 1120
WD40-rpts                                                                                      

Query     1121 GMVSLRRRTGQQKFFKYTTANKDQGHYRMTHSSFWDISTKIRDRQASMSEEKTPEESVDYDAQFIERLVGGTYTNTDLQG 1200
WD40-rpts                                                                                      

Query     1201 PSNAPVTIPVLVAPEDSTSAEPSTSGQSLLMRSPRPQSPPLRDIKMDLSDDDYSATDLATTCKLEPKQESFEDVKDVKRE 1280
WD40-rpts                                                                                      

Query     1281 NSPDARPTVIISDDAGRIRRERFANKYISRIRPKHDQIIGGHRTDEVYVYVRGRGRGRYICDRCGIRCKKPSMLKKHIKS 1360
WD40-rpts                                                                                      

Query     1361 HTDVRAFNCTACNFSFKTKGNLTKHLSSKTHQRRISNIQAGNDSDGTTPSTSSMMNMDDGYHRNQPLFDDYDNNSSDEED 1440
WD40-rpts                                                                                      

Query     1441 YDHLNRMQAEHKFKFGQEHILFERTAHTPPTRWCLVEAQNDHYWPSPDRRSCMSAPPVAMQRDFDDRGQ 1509
WD40-rpts                                                                           

1 WD40-repeats found in QUERY=T05A10.1j (Len=1509):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   688-795      2.99  238.32  0.03757       15.0%      1.24

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  688-795    SGTLTHIYENYNISPICVKQFLHFASQLTDQQLEEMTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHHCSGKRDNKDPSKN

   WD40 Template    TGECLRTLSGHTSG---------------------------------------VTSVSFSPDGK-------------------RL----------VSGSEDGTIKVWD