Input parameters:

  Query = T03F6.4 (Len=388)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T03F6.4, Len=388):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MREEPTLLNLPNEVLLKVIRNLPRHDIFFGVAHVNNRFRGLVQKNLKTIRLFEAHCHVNIVDNRPLSKYREDGTDPIITY 80  
WD40-rpts                                                                                      

Query       81 SFTLFDTRGPEFTQKRRLCLRGNDVRYKELHVSHFSDSTMQAQFERVGTRHDVSVSPITTRTLLAYMNLQAIRFQVRKQC 160 
WD40-rpts                          (_____________________________________________WD 1__________

Query      161 KPESQRIEDNFFADCLTFFDKVCGRVEIKSLLLCSKTILFPWQLAPKSLIKLSELQGLQNLILENMTTFDPFSSFLKLPT 240 
WD40-rpts      __________________________________)                                             

Query      241 KNLASLQFRLDPRHRMDIDQMTMAPVNGSLLKILSSSAVYRLDFSAYTEVSQIVSAIDAVDMCFFIEKWHYSPKPWIIKG 320 
WD40-rpts                                        (__________________________WD 2_______________

Query      321 ISFNSTVTIDEFRIAVYKTLPPNFAIPVPYCRFQTSHRTSMGIVLELACYANGTATQWIIRTGYINSC 388 
WD40-rpts      __________)                                                         

2 WD40-repeats found in QUERY=T03F6.4 (Len=388):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   101-195      3.86  274.12  0.01252       25.0%     13.89
  WD 2:  Seg 12   275-331      3.34  252.82  0.02412       12.5%     29.14

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  101-195    RGNDVRYKELHV-----------------SHFSDSTMQAQFERVGTRHDVSVSPITTRTLLAYMNLQAIRFQVRKQCKPESQRIEDNFFADCLTFFDKVCGRVEIKSLLLCS
   WD 2  275-331    SSSAVYRLDFSAYTEVSQIVSAIDAVDMCFFIEK---------------WHYSPK-------------------------PWII---------------KGISFNSTVTIDE

   WD40 Template    TGECLRTLSGHT-----------------SGVTS---------------VSFSPD-------------------------GKRL---------------VSGSEDGTIKVWD