Input parameters:

  Query = T02H6.1a (Len=540)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T02H6.1a, Len=540):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPAFFVKAGAKKSGGGAAATRKRKNGGKSDAKSEEMAAKMSRRQKIMAATEIHSDEEDSLAGSAAASEAGSDVEYEDAHE 80  
WD40-rpts                                                    (_____________________WD 1________

Query       81 RNYREAKKLLDKIQSTTTTQEEVAEKLRDDAVARTGTQVKRVADVVELEDDLEISYKPHRLSPLCVAFSPDAKYVISCGK 160 
WD40-rpts      _____________)(_____________WD 2_____________)   (_________________WD 3_________

Query      161 ESSIVKFNVGTRKVVGIIKRTKKRAGVPEEPTNAHYGVIFTVAVSPDQKFIASGGFDQVVKIWNFDSLEHIKDLSGHRGP 240 
WD40-rpts      _______)                 (_________________WD 4________________)   (____________

Query      241 IFSLTFQLKTNNLYSASQDRSVKMWDIDQLGLVDTMYGHQDGVQQIGVLSKQRVATVGGRDRSARLWKVEDESQLMFSGL 320 
WD40-rpts      _____WD 5________________)   (_________________WD 6________________)   (________

Query      321 QNCVSLDCVAMINEEHFATGSADGSIALWSFWKKRALHVRKQAHGTQNGSGRWIVALAVLPYSDLLASGSNEGELKLWKI 400 
WD40-rpts      _________WD 7________________)          (_________________WD 8________________)(

Query      401 SENFRQLTPFFSYSIPGFINSINFAPNGKSIVVGAGKEHKDGRWWMEVIIMTSPLVIRRLLEQFQGLLLVVVEESNRVMN 480 
WD40-rpts      _____________________WD 9____________________)       (_________________WD10_____

Query      481 LKKKKKSWRKSWKRRKKKLRNKIPHCLRLRLPTYTHQSLLQITSSLIKLLLFLSVFPPVF 540 
WD40-rpts      ____________)                                               

10 WD40-repeats found in QUERY=T02H6.1a (Len=540):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    47-94       6.98  402.82  0.00023       12.5%     19.14
  WD 2:  Seg  2    95-126      2.95  236.63  0.03956        7.5%     34.29
  WD 3:  Seg  5   130-168      8.87  481.00  2.0e-05       22.5%     55.34
  WD 4:  Seg 10   186-224      9.11  490.83  1.5e-05       30.0%     42.03
  WD 5:  Seg 13   228-266      9.75  517.36  6.6e-06       35.0%     51.29
  WD 6:  Seg 17   270-308      8.92  483.33  1.9e-05       20.0%     53.13
  WD 7:  Seg 21   312-350      6.69  391.09  0.00033       17.5%     55.87
  WD 8:  Seg 26   361-399      8.98  485.41  1.8e-05       25.0%     48.23
  WD 9:  Seg 29   400-446      6.16  369.19  0.00066       27.5%     53.87
  WD10:  Seg 33   454-493      6.29  374.67  0.00056       15.0%     52.41

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-94     -------MAATEIHS--DEEDSLAGSAAASEAG-SDV--EYED-AHERNYREAKKLLDKIQ
   WD 2   95-126    ------------STT--TTQEEVAEKLRDDAVARTGT--QVKR-VADVV------------
   WD 3  130-168    -DD---LEISYKPHR--LSPLCVAFSPDAKYVI-SCG--KESS-IVKFN------------
   WD 4  186-224    -GV---PEEPTNAHY--GVIFTVAVSPDQKFIA-SGG--FDQV-VKIWN------------
   WD 5  228-266    -LE---HIKDLSGHR--GPIFSLTFQLKTNNLY-SAS--QDRS-VKMWD------------
   WD 6  270-308    -LG---LVDTMYGHQ--DGVQQIGVLSKQRVAT-VGG--RDRS-ARLWK------------
   WD 7  312-350    -ES---QLMFSGLQN--CVSLDCVAMINEEHFA-TGS--ADGS-IALWS------------
   WD 8  361-399    -KQ---AHGTQNGSG--RWIVALAVLPYSDLLA-SGS--NEGE-LKLWK------------
   WD 9  400-446    ISENFRQLTPFFSYSIPGFINSINFAPNGKSIV-VGAGKEHKD-GRWWM------------
   WD10  454-493    -PL---VIRRLLEQF--QGLLLVVVEESNRVMN-LKK--KKKSWRKSWK------------

   WD40 Template    TGE---CLRTLSGHT--SGVTSVSFSPDGKRLV-SGS--EDGT-IKVWD------------