Input parameters:

  Query = T02G6.11 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T02G6.11, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQIPFQLLNLPCTVLRKILPCLKIDDTLELGLKSHKFRKAIRQYRKITAHTLSWNILKTEIQIVLKFDGFTDRICFKPLE 80  
WD40-rpts                                                                         (____________

Query       81 NCHTSNVSQLQFSVRRRRASLDIFCIGSVNEDSSIIMHKCSSILLELLRVEDYELRLECSKNFDLSHFFVWNFTTHFSFV 160 
WD40-rpts      __________________WD 1_____________________________)                            

Query      161 EFSPTNGEDFHKLTFLQNRVTTDILQLSQYKIDNVYHRKQIQLPVLTQSCVKISLMNFGEISNLFKMEVKRLEVYKNCSI 240 
WD40-rpts                                                                                      

Query      241 TCKKINELFKHWISGGMEHLEVFTADQGFYDTHKLLEGIEMVDLSSHRPAHPDSDFMSMCETKKCDIQRSVDGRRATIFR 320 
WD40-rpts                                                                                      

Query      321 DCKKVSLMVWPADITISTPCAGTWTAWANVTGAVCNDTCGLFGRIDQYRECLPRGCQCSGLSTQEARCADDTCKFPRVAC 400 
WD40-rpts                                                                                      

Query      401 SDPATKIIDLELQRVYCKMPDFTKAQDILISTKGNDSTHDGALEQK 446 
WD40-rpts                                                    

1 WD40-repeats found in QUERY=T02G6.11 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    68-132      3.58  262.46  0.01794       32.5%     21.12

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   68-132    DGFTDRICFKPLENCHTSNVSQLQFSVRRRRASLDIFCIGSVNEDSSIIMHKCSSILLELLRVED

   WD40 Template    TGECLRTL-----SGHTSGVTSV-------SFSPDGKRLVSGSEDGTIKVW-------------D