Input parameters:

  Query = T01G1.3 (Len=1083)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T01G1.3, Len=1083):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSKLYSRSGVFVWSPRGIQKKGLIVADFAQFFDPTATSIEPKIDFLPASEIYEKSNLAPNVSHATNYRFNELAWTSLCS 80  
WD40-rpts                                                                                      

Query       81 DAHPNGIIAGGTEDGTVVFFDADKFIKNQSLEVLLSRRDHHGHVLTIDVSRDGRWMASGGGSGQILLWDCANLKTPFSPG 160 
WD40-rpts                                    (_________________WD 1________________)(__________

Query      161 SPNFPDQVKLLRWNLKNESVFASISSRRVSFWDLRRNGSPVLEFAEIPGCDWSSLSWNPSDASQLIVSSQSQHASVIQKW 240 
WD40-rpts      _________WD 2___________________)(_____________________WD 3_____________________

Query      241 DSRFTSTPVKEYRHHNMGITSVDWNKADDRLVISSGCDGQVVIWNHETSEVLGGVGSLQGDWIRNVKWNEEEPSQFAIQY 320 
WD40-rpts      )    (_________________WD 4_________________)   (__________________WD 5_________

Query      321 FQHPVQISSLTSLGSPQPGADVLAARISDQFVPAWHRAPLIGSSIALGGRLATFWKSYDAMTQQWHHNVEIETIVPENDV 400 
WD40-rpts      ________)                                                                       

Query      401 GVNDIAQYLHIKDDKRNLGWYLHERAYAPSSDTSEEADLTRKVWLILLALQEGAGRTKMLNYLGLVESQDEEFSEKNAAS 480 
WD40-rpts                                                                                      

Query      481 AVSNPNIQPTAIPDRSARSTSVVSGADTDIDIPEVTVIERCSSVNWSTLDNSGWDLLLHTIRQDHLEVIRVLISSNQHVA 560 
WD40-rpts                                                                                      

Query      561 AMMYAAQHETDHLAMILDDYNKKFNNSSPLSSIILALSSSSSANKTEITPSKQSSEQEVSQQIGSILQTFPDQKWSELLG 640 
WD40-rpts                                                                                      

Query      641 FIIAHESNATDIRLAAKCIGKRWLEQGKPLRACIAFLIAGDIDHLLLANTSFTLVDRLKQALILHQVSKGAKYSDGLEKL 720 
WD40-rpts                                                                                      

Query      721 IMNFANELLIQGAGSVAWNLVKWSQNGSAEMQELQWTCYNVAGGRDCTGDQPPFNPFDVALPRAQQPPIVQPTRTYQQPA 800 
WD40-rpts                                                                                      

Query      801 PIPPPNLVNGFNPYNPSHSQCPPPPMDYSNNRRNSNLTPMPPSSTFYQTPSWDHKPPPTMPANMPPSKPVAPVTPGWNDP 880 
WD40-rpts                                                                                      

Query      881 PPMALKPTTVAQPKQNVMEINWKPIETAQAPGGMMTGQQLNGFAGGYQNVMTNGIQGMSIHNQQSSAASSAFPSPNSYQQ 960 
WD40-rpts                                                                                      

Query      961 RPASAASVVAPAPIQLSPEDEKIIEPINTLAQCIIENARIQARMEKAQDLRTRIQAELSPRLAANRLSPESKQHLTHMAY 1040
WD40-rpts                                                                                      

Query     1041 FVSMRQIREAQAVVAQMARNSGDFVEISSFLPALKSLLSLASH 1083
WD40-rpts                                                 

5 WD40-repeats found in QUERY=T01G1.3 (Len=1083):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   111-149      7.65  430.76  9.7e-05       32.5%     48.69
  WD 2:  Seg 10   150-193      4.55  302.51  0.00521       10.0%     44.69
  WD 3:  Seg 13   194-241      3.46  257.78  0.02072       25.0%     50.56
  WD 4:  Seg 16   246-285      6.38  378.22  0.00050       25.0%     49.22
  WD 5:  Seg 20   289-329      3.05  240.47  0.03520       10.0%     46.01

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  111-149    -LE----VLLSR-R----DHHGHVLTIDVSR-DG-RWMASGGGS---GQILLWD
   WD 2  150-193    CAN----LKTPF-SPGSPNFPDQVKLLRWNL-KN-ESVFASISS---RRVSFWD
   WD 3  194-241    LRRNGSPVLEFA-E----IPGCDWSSLSWNPSDA-SQLIVSSQSQHASVIQKWD
   WD 4  246-285    -ST----PVKEY-R----HHNMGITSVDWNKADD-RLVISSGCD---GQVVIWN
   WD 5  289-329    -SE----VLGGVGS----LQGDWIRNVKWNE-EEPSQFAIQYFQ---HPVQISS

   WD40 Template    TGE----CLRTL-S----GHTSGVTSVSFSP-DG-KRLVSGSED---GTIKVWD