Input parameters:

  Query = T01G1.1d (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T01G1.1d, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRGNVITRTHTLEGHARGVLSVDVNEKLMVTGSKDRTAKLWDIEACREIRTLGIHPNNVHLVKFVPFSNYVFTFSMFEAR 80  
WD40-rpts          (________________WD 1________________)   (________________WD 2______________

Query       81 AWDYRTPECICVKVLNSSGQVNEGDSIDVSQVMPRQNTIPFLETLITAADVDPTGQLLFTSFSAYVRVWNLREWKPLGRL 160 
WD40-rpts      __)(_____________WD 3_____________)(_______________WD 4______________)   (______

Query      161 NAASHSPKSEVSCLRTTMTPEGSILAYTGSRDHYVKEYEVGLGTGVIESKCEFTPPHYDNVTAVLPLNGHLYTASKDVNI 240 
WD40-rpts      ______________WD 5____________________)   (__________________WD 6_______________

Query      241 MKFSLKDGKREHLELRAHQQYIQSLTGFGPKGKELLVSACKDGTIRFWDVGSSSRMKLVEEYSKAHQEGINDMCSTKSML 320 
WD40-rpts      ___)(____________________WD 7___________________)(___________________WD 8_______

Query      321 FTASGDSTVGFWKSNAV 337 
WD40-rpts      ____________)    

8 WD40-repeats found in QUERY=T01G1.1d (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-42       8.18  452.42  5.0e-05       42.5%     49.76
  WD 2:  Seg  5    46-83       7.57  427.31  0.00011       27.5%     56.24
  WD 3:  Seg  9    84-115      3.83  272.83  0.01303        7.5%     31.66
  WD 4:  Seg 12   116-150      6.50  383.26  0.00043       20.0%     44.42
  WD 5:  Seg 15   154-199      6.26  373.05  0.00058       25.0%     42.82
  WD 6:  Seg 19   203-244      6.00  362.35  0.00081       15.0%     54.38
  WD 7:  Seg 23   245-289      7.10  408.13  0.00020       42.5%     45.81
  WD 8:  Seg 27   290-333      6.30  374.90  0.00055       20.0%     40.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-42     VIT------RTH---TLEGHARG---VLS------VD-V--NEKL-MVT-GSKDRTAKLWD
   WD 2   46-83     -CR------EIR---TLGIHPNN---VHL------VK-FVPFSNY-VFT-FSMF-EARAWD
   WD 3   84-115    -----------------YRTPEC---ICV------KV-LNSSGQV-NEG-DSIDVSQVMPR
   WD 4  116-150    ----------QN---TIPFLETL---ITA------AD-VDPTGQL-LFT--SFSAYVRVWN
   WD 5  154-199    -WK------PLG---RLNAASHS---PKSEVSCLRTT-MTPEGSI-LAYTGSRDHYVKEYE
   WD 6  203-244    -GT------GVI---ESKCEFTPPHYDNV------TA-VLPLNGH-LYT-ASKDVNIMKFS
   WD 7  245-289    LKD------GKREHLELRAHQQY---IQS------LTGFGPKGKELLVS-ACKDGTIRFWD
   WD 8  290-333    VGSSSRMKLVEE---YSKAHQEG---IND------MC-STKSM---LFT-ASGDSTVGFWK

   WD40 Template    TGE------CLR---TLSGHTSG---VTS------VS-FSPDGKR-LVS-GSEDGTIKVWD