Input parameters:

  Query = T01G1.1b (Len=378)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T01G1.1b, Len=378):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSDANANPTVDVGADVGDSDERKEKKKRIKQSRIVPVKDGMRGNVITRTHTLEGHARGVLSVDVNEKLMVTGSKDRTAK 80  
WD40-rpts                                                    (________________WD 1_____________

Query       81 LWDIEACREIRTLGIHPNNVHLVKFVPFSNYVFTFSMFEARAWDYRTPECICVKVLNSSGQVNEGDSIDVSQVMPRQNTI 160 
WD40-rpts      __)   (________________WD 2________________)(_____________WD 3_____________)(___

Query      161 PFLETLITAADVDPTGQLLFTSFSAYVRVWNLREWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRDHYVKEYE 240 
WD40-rpts      ____________WD 4______________)   (____________________WD 5____________________)

Query      241 VGLGTGVIESKCEFTPPHYDNVTAVLPLNGHLYTASKDVNIMKFSLKDGKREHLELRAHQQYIQSLTGFGPKGKELLVSA 320 
WD40-rpts         (__________________WD 6__________________)(____________________WD 7__________

Query      321 CKDGTIRFWDVGSSSRMKLVEEYSKAHQEGINDMCSTKSMLFTASGDSTVGFWKSNAV 378 
WD40-rpts      _________)(___________________WD 8___________________)    

8 WD40-repeats found in QUERY=T01G1.1b (Len=378):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    47-83       7.43  421.60  0.00013       42.5%     48.07
  WD 2:  Seg  6    87-124      7.67  431.56  9.5e-05       27.5%     55.95
  WD 3:  Seg 10   125-156      3.90  275.63  0.01195        7.5%     29.96
  WD 4:  Seg 13   157-191      6.60  387.15  0.00038       20.0%     44.89
  WD 5:  Seg 16   195-240      6.28  373.96  0.00057       25.0%     43.36
  WD 6:  Seg 20   244-285      6.13  368.02  0.00068       15.0%     54.14
  WD 7:  Seg 24   286-330      7.09  407.59  0.00020       42.5%     45.29
  WD 8:  Seg 28   331-374      6.21  371.11  0.00062       20.0%     40.38

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-83     -IT------RTH---TLEGHARG---VLS------VD-V--NEKL-MVT-GSKDRTAKLWD
   WD 2   87-124    -CR------EIR---TLGIHPNN---VHL------VK-FVPFSNY-VFT-FSMF-EARAWD
   WD 3  125-156    -----------------YRTPEC---ICV------KV-LNSSGQV-NEG-DSIDVSQVMPR
   WD 4  157-191    ----------QN---TIPFLETL---ITA------AD-VDPTGQL-LFT--SFSAYVRVWN
   WD 5  195-240    -WK------PLG---RLNAASHS---PKSEVSCLRTT-MTPEGSI-LAYTGSRDHYVKEYE
   WD 6  244-285    -GT------GVI---ESKCEFTPPHYDNV------TA-VLPLNGH-LYT-ASKDVNIMKFS
   WD 7  286-330    LKD------GKREHLELRAHQQY---IQS------LTGFGPKGKELLVS-ACKDGTIRFWD
   WD 8  331-374    VGSSSRMKLVEE---YSKAHQEG---IND------MC-STKSM---LFT-ASGDSTVGFWK

   WD40 Template    TGE------CLR---TLSGHTSG---VTS------VS-FSPDGKR-LVS-GSEDGTIKVWD