Input parameters:

  Query = T01E8.4 (Len=406)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T01E8.4, Len=406):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNAQPTELISLPSELLCHLFTYLPQRQLITEIPLVCRRFNTILNDDKFWSRRIRTEQKVRLPDCELKHPEYEPKKSFYA 80  
WD40-rpts                                                  (_____________________WD 1__________

Query       81 MHRQRDRWRAWETQTVITAPGHSATVDSVMLFENNNKQFCLSGSRDRTIRLWSIENARNGEDTEQNPWTVAKDDTAHSGW 160 
WD40-rpts      ___________)(__________________WD 2_________________)              (____________

Query      161 IWNMAQESTSTNFYTTSWDSTVKSWHITDNGALQNLNSVNVGSAAQCISCSGNENEVVCTTFAKRVAVIDSRTFQVVADH 240 
WD40-rpts      _____WD 3________________)   (__________________WD 4_________________)   (______

Query      241 KLHKRAVIALAVQGDKIFTSGEDRLMMMVDRRNFSKPVLFEYSPTAYKSCLSLQCNQLLTSTSDGKVKLYDANNFNVLQT 320 
WD40-rpts      __________WD 5_______________)  (_________________WD 6________________)(________

Query      321 YSVGSYTRQSFLEHGAHLIMARSLKRNYTFSIYSPGTRSQQWCASHELAAEPAKFDYSPSSRTLAIGNGDSSILFCLPAS 400 
WD40-rpts      ___________WD 7__________________)(___________________WD 8__________________)   

Query      401 APDQEN 406 
WD40-rpts            

8 WD40-repeats found in QUERY=T01E8.4 (Len=406):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    45-92       7.01  404.19  0.00022        5.0%     45.22
  WD 2:  Seg  4    93-133      8.08  448.50  5.6e-05       32.5%     48.85
  WD 3:  Seg  8   148-186      7.93  442.22  6.8e-05       15.0%     54.43
  WD 4:  Seg 12   190-230      7.36  418.55  0.00014       20.0%     55.13
  WD 5:  Seg 16   234-270      7.03  405.14  0.00022       15.0%     50.13
  WD 6:  Seg 20   273-311      8.31  457.96  4.2e-05       17.5%     48.82
  WD 7:  Seg 23   312-354      5.88  357.54  0.00095       15.0%     44.76
  WD 8:  Seg 27   355-397      6.49  382.57  0.00043       17.5%     54.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-92     ND---DKFWSRRIRTEQKVRLPD--CELKHPEY--EPKKSFYAMHRQ---RDRWRAWE
   WD 2   93-133    -T---QTV--------ITAPGHS--ATVDSVMLFENNNKQFCLSGSR---DRTIRLWS
   WD 3  148-186    -W---TVA--------KDDTAHS--GWIWNMAQ--ESTSTNFYTTSW---DSTVKSWH
   WD 4  190-230    -N---GAL--------QNLNSVNVGSAAQCISC--SGNENEVVCTTF---AKRVAVID
   WD 5  234-270    -F---QVV--------ADHKLHK--RAV--IAL--AVQGDKIFTSGE---DRLMMMVD
   WD 6  273-311    -N---FSK--------PVLFEYS--PTAYKSCL--SLQCNQLLTSTS---DGKVKLYD
   WD 7  312-354    AN---NFN--------VLQTYSV--GSYTRQSF--LEHGAHLIMARSLKRNYTFSIYS
   WD 8  355-397    PGTRSQQW--------CASHELA--AEPAKFDY--SPSSRTLAIGNG---DSSILFCL

   WD40 Template    TG---ECL--------RTLSGHT--SGVTSVSF--SPDGKRLVSGSE---DGTIKVWD