Input parameters:

  Query = R11G11.14 (Len=404)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R11G11.14, Len=404):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCSSLCALLLVILAVHNVHAKSDPELHMTTPQIIERWGYPAMIYSVTTDDGYILELHRIPHGKTNVTWPNGKQPVVFMQH 80  
WD40-rpts                                                                                      

Query       81 GLLCASTDWTMNLPEQSAAFIFADAGFDVWLGNMRGNTYSMKHKNLKASHSDFWEWSWDEMATYDLPAMIDKVLEVTGQE 160 
WD40-rpts                                                                                  (___

Query      161 SLYYMGHSQGTLTMFSHLSKDDGIFAKKIKKFFALAPVGSVKDIKGFLSFFAHYFSLEFDGWFDVFGAGEFLPNNWAMKL 240 
WD40-rpts      ______________________________________________________________________WD 1______

Query      241 AAKDICGGLKIESDLCDNVCFLIAGPESDQWNSTRVPVYASHDPAGTATQNIVHWIQMVRHGGVPAYDWGSKENKKKYGQ 320 
WD40-rpts      ___________________________________________________________________)            

Query      321 ANPPEYDFTAIKGTQIYLYWSDADWLADKTDITNYLLTRLNPAIIAQNNYFTDYNHFDFVFGLRAPNDIYLPIVDICTKD 400 
WD40-rpts                                                                                      

Query      401 YNGK 404 
WD40-rpts          

1 WD40-repeats found in QUERY=R11G11.14 (Len=404):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   157-308      2.93  235.80  0.04058       35.0%      9.88

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  157-308    TGQESLYYMGHSQGTLTMFSHLSKDDGIFAKKIKKFFALAPVGSVKDIKGFLSFFAHYFSLEFDGWFDVFGAGEFLPNNWAMKLAAKDICGGLKIESDLCDNVCFLIAGPESDQWNSTRVPVYASHDPAGTATQNIVHWIQMVRHGGVPAYD

   WD40 Template    TGECLRTLSGHT---------------------------SGVTSVSFS----------------------------PD--------------GK------------------------RLV---SGSEDGT----------------IKVWD