Input parameters:

  Query = R11E3.7a (Len=643)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R11E3.7a, Len=643):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTDEEVPLATRQMHEAFVTISQQMLQFRVNTARITTPSDYEPQEVWVIYETLECPDQRQYMRSRGLVSRNKLWMLMETE 80  
WD40-rpts                                                                                      

Query       81 TDKDWKYFTHIFSDDCKVCVFVAESIEMGHDKDVIQVEDVQYKKAKFTVALVKYVYHGPIIVTGPNAHFKLSRNNKKLLY 160 
WD40-rpts                                                                                      

Query      161 FALPNEEQKETQGRGERQFVICIFDFDAKGVTVITDENICNQTITAVEWTPDGRGIVFHRGQDLLWHRFGEKYINEISTN 240 
WD40-rpts                                                                           (__________

Query      241 LSAPLRITFSPDESRMAVFLRPNIHNDADIILFHYPFVKAAVQVRHDVLRLGKSKVWSVPDRPWACNGKHLLFNTNYKNQ 320 
WD40-rpts      _______WD 1_________________)                                                   

Query      321 VNNLAIHVESLRTTCLDLKRPSLIIDVRGDEFLFETITANAYSRLWHSQLGSQSDGKFTASLLCTHKPENDTIHNFHIYP 400 
WD40-rpts                                                                                      

Query      401 MSFQKIGNSAILYMLPECVSPGSKFPLVVVPFSGLEPNFTVSTVDPVLSTMVTCGFCVLVVNYREPFIAIPGTCFPKNCG 480 
WD40-rpts                                                                                      

Query      481 SECINDVHETVLEVLERHGARLDEKYIYLYGFEFGSFVACSLIIKHKKFYKGCALVRPMLEFPFTTCAVDTENPEAEFLK 560 
WD40-rpts                                                                                      

Query      561 DVEPVSHASEIVTPMLIVLENKSDTKYKDFESTIHNNGVPCFGEYEEEDEQVNDFVVKVIQFYRTPYGEYENGSRIETPV 640 
WD40-rpts                                                                                      

Query      641 PDD 643 
WD40-rpts         

1 WD40-repeats found in QUERY=R11E3.7a (Len=643):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   230-269      3.42  256.12  0.02180       20.0%     28.68

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  230-269    GEKYINEISTNLSAPLRITFSPDESRMAVFLRPNIHNDAD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD