Input parameters:

  Query = R11D1.1a (Len=621)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R11D1.1a, Len=621):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLVEEEPPPENEENMDIEISKSTNNQFKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRF 80  
WD40-rpts                                                             (________________WD 1____

Query       81 LASGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD 160 
WD40-rpts      ____________)(______________________WD 2_____________________)(_________________

Query      161 VYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 240 
WD40-rpts      __WD 3___________________)   (___________________WD 4__________________)        

Query      241 YQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGS 320 
WD40-rpts         (________________WD 5________________)         (_________________WD 6________

Query      321 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPW 400 
WD40-rpts      ________)                          (_________________WD 7________________)      

Query      401 SYDLPFERRPHGTYDLSAEEECLREMEERRVVEDALDLNGEMDGRACWRDIFGGDARTAEDRDTLEMFDPRGHGDDEEDV 480 
WD40-rpts                              (____________________WD 8___________________)           

Query      481 EESSSEDSDDMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHDGVENDLLEELFNMRRRFREESSDEDDSGD 560 
WD40-rpts                                                                                      

Query      561 DGENGDENDNENDNIESSSSNSDSSDASEVGDLMDFDGDDEEEDEGDDEAAIEEQDSDSEA 621 
WD40-rpts                                                                   

8 WD40-repeats found in QUERY=R11D1.1a (Len=621):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    56-93       7.37  419.17  0.00014       27.5%     42.03
  WD 2:  Seg  5    94-142      7.75  434.98  8.5e-05       27.5%     45.75
  WD 3:  Seg  8   143-186      6.99  403.61  0.00023       10.0%     53.44
  WD 4:  Seg 12   190-232      5.28  332.62  0.00205       20.0%     48.24
  WD 5:  Seg 17   244-281      7.41  420.67  0.00013       15.0%     43.19
  WD 6:  Seg 21   291-329      5.89  357.95  0.00093       17.5%     32.08
  WD 7:  Seg 25   356-394      8.56  468.12  3.1e-05       32.5%     47.50
  WD 8:  Seg 29   425-469      2.96  237.05  0.03906       12.5%     17.66

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-93     -PF----CQ---------KDVREHT-----G---CINALQFSHN-DRFLASGD-DMHGRVWN
   WD 2   94-142    VDE----LMVRKTPKPIGVMEHPHR-----S---NIFSLEFDLE-NRFLYSGERWGTVIKHD
   WD 3  143-186    IETKQSIYV---------ANENNNR-----G---DVYHMDQHPT-DNTLIVVTRAKLVSFID
   WD 4  190-232    -RQ----NP---------ISLVLPA-----NSGKNFYTAEFHPETPALILVNSETGGPNVFD
   WD 5  244-281    --S----MF---------KGLPQEN-----T---EWMGSLWSPS-GNQFMSIRRGKCPLYFD
   WD 6  291-329    KSD----HN---------PNGYCNI-----K---TIKSMTFI-D-DYTVATGSDHWGIHIWK
   WD 7  356-394    -EK----EL---------TVLRGHR-----S---VPNQVRFSQH-NNLLVSSGVENSFKLWS
   WD 8  425-469    EME----ER---------RVVEDALDLNGEM---DGRACWRDIF-GGDARTAEDRDTLEMFD

   WD40 Template    TGE----CL---------RTLSGHT-----S---GVTSVSFSPD-GKRLVSGSEDGTIKVWD