Input parameters:

  Query = R09E10.3 (Len=700)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R09E10.3, Len=700):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSYRGLNLITRQVISRLTFRYSGLFTRITYPISVQDRGFFFGKRRVPRCDLKNQSIIQEDGGRKAAWLGDGPLQHGWFEG 80  
WD40-rpts                                                                                      

Query       81 VLTTYSGIRRGPTVGGKEMLGKRVMKDGKLEWEWISYDQAFETSDHASQAIRKLGIEIGEESKIGIYSNNRPEWILSEMA 160 
WD40-rpts                                                                                      

Query      161 IHNFSNVSVPLYDTITNDDMHYITNLCEISLMFVDAEIKTKQLIRDKSYLSSLKYIVQFNECSDDIKEMARENDFRLWSF 240 
WD40-rpts                                                                                      

Query      241 NEFVEMGKKQKHRPHVPPTPETLATISFTSGTTGRPKGVMLTHLNMCSATMSCEEFENEAGVQDAYLSYLPLAHIYERLC 320 
WD40-rpts                                                                                      

Query      321 LLSNFMIGSRIGFSRGDPKLLVDDVQALAPRSFATVPRVIDKIHKAVMKQVQDKPLKKMILNAAIAYKLYHYKMTGKATR 400 
WD40-rpts            (__________________________________________________________WD 1___________

Query      401 KTWVDKYVLHKIQMLLGPNIRQLILGAAKSDVSAMRFARGAFGVEVLEGYGQTETSGPTTLQLVGDTRIGCVGPPMACAM 480 
WD40-rpts      _______________________________________________)                                

Query      481 IKLIDVPELGYSVDKNGGEVLVKGHNVTSGYYKNPEATASSFTEDGYMKTGDIGRFTAEGSLQIIDRRKNVFKMPQGKFV 560 
WD40-rpts                                                                                      

Query      561 APDLTESLYTSSSFVQQIYVHGDMEKPWLVAIVVPDPEYLASYALTKHNINGKTYEQLCNIPILADDVLRQFVELTEEDK 640 
WD40-rpts                                                                                      

Query      641 RPRYEGVYGVHLTPVAFSAENGLTTPTLKNKRNAIAQFFKAEIDGMYKKIETSELSNLAK 700 
WD40-rpts                                                                  

1 WD40-repeats found in QUERY=R09E10.3 (Len=700):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   327-448      2.83  231.75  0.04588       20.0%     14.28

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  327-448    IGSRIGFSRGDPKLLVDDVQALAPRSFATVPRVIDKIHKAVMKQVQDKPLKKMILNAAIAYKLYHYKMTGKATRKTWVDKYVLHKIQMLLGPNIRQLILGAAKSDVSAMRFARGAFGVEVLE

   WD40 Template    TGECLRTLSGH---------------TSGV--------------------------------------TSVSFS-----------------PDGKRLVSGSEDGT------------IKVWD