Input parameters:

  Query = R06F6.8b (Len=1470)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R06F6.8b, Len=1470):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFIPNDRPSVLQLPKHEKDSTAADIKSIVANRDRRLIAVATNDAIYIWLANPQLLLCSVGVIDANFKETRGELKEIYWKP 80  
WD40-rpts                                                                   (________________WD

Query       81 DSTSIAVTTNQCKILIYNLDLRDDEQCYNFTDSADPYFQRNSPELFIKGSRPTAHLHPTIIINLADIPTCCVPSRDEFLV 160 
WD40-rpts       1_______________)                                                              

Query      161 CLQNGFTHHVTWTGEIIASLSFRASSIPFSVDQLQSKSENITSKSTYIFDAVYAPLLGGFAIVLSDGQGALLTSNDPNFA 240 
WD40-rpts                                                                                      

Query      241 PNAILGVWAPNMKDATCCDVNHKFLLILFGCKNGDVCAYNIDELNGSLVQSFRVAPKVTNGPDLTNRLGPVHRITALANG 320 
WD40-rpts                                                                                      

Query      321 YGFGAIWSPLSGAHALPRLVAVFTSFGAQSFCNLEGVVEEDQNDRYTAIEWGPEGFQLWLGTENELMMQPFVRSASCSSP 400 
WD40-rpts                                                                                      

Query      401 AMEHCDRAVLMSDSQVLISAARDREAEACAPHSVWDHITVTHEYLSSNWPLRYASTDRNYKHLVVAGDQGMAYCSLSNRR 480 
WD40-rpts                                                                                      

Query      481 WKIFGNETQEKNLLVTGGVFIWNDDVIGVVGVAADTDKSHLSFYPISQRLDSRYASVVDLEHKSVMSVLRDDVCAVFDIS 560 
WD40-rpts                                                                                      

Query      561 AQITLYKLTAHLETGRDAFTKVSTEIVTVIRINEIVPHPTCIVSLQMTQLNLDVRGKLSPAFYSSIDTVLVNISGRLITL 640 
WD40-rpts                                                                                      

Query      641 SVNEDGKLHQPMVIASYVEKMWHDRCQVSQSTQSQNQDLPWKNHRRNGSNVSIQSVSTSTTSEPSSPMNQSCSSHLSNAL 720 
WD40-rpts                                                                                      

Query      721 WIACGAKGIKVWMPLVPGKRNLATQEMTFIAKRIMLPFELDIYPIVISAKDCLAMGVESQLQHVARASRNQGQMESITMY 800 
WD40-rpts                                                                                      

Query      801 GLHRNSEVFVHHLLRQLLKRNLGVFALELAGACRSLPHFTHALELLLHGVLEEEATSSEPIPDPLLPRCVAFIHEFPEFL 880 
WD40-rpts                                                                                      

Query      881 KTVAHCARKTELALWRTLFDVTGSPNALFEECLQLKQLENAASFVIVLQNLETTEVSMDQAARLVKEALEEKKWTIAKEM 960 
WD40-rpts                                                                                      

Query      961 VRFARSIGSEDIDAFFRTPPPSAKTSLSRRPTVSSPSADSSTEFVINRFQAGAAGGRLNKVRHSQSTEQKDAPRKDSIGG 1040
WD40-rpts                                                                                      

Query     1041 SSKDKMALSWGLSGELSPQLATNRLAAKMTSILEDHAWHLLNNYWLLDLGFFWSELQFDLLGLLETRRKQISLSPKTTNE 1120
WD40-rpts                                                                                      

Query     1121 NCFLIEDFALALTRLHAQFSWPYPLIGSQFVHQIEKKLGNIRVSQSTASLNGLLNDSLDNIKKPKARKLERTVVDLNGAR 1200
WD40-rpts                                                                                      

Query     1201 SRIRETDIEASEEDVEIQEAVLERVRGSAVELAPVIDRSPSTSSSMNHHAPLAPPSPSSCDSRSLAGDCYQNTDFLVGEK 1280
WD40-rpts                                                                                      

Query     1281 SSRGNLQSSHQLELLLSLFSQTATIDWIFLFCLLSRDERKLRQEINVSMVRRAGEKSFARVRFACSELSRWAVEKCCGYV 1360
WD40-rpts                                                                                      

Query     1361 ALLQAFDAHLAVVAEQAGCADLKFSPDNENRKASQKTSADDPKRGRRRADSGSSKLNNSFSNPKLNGMNGGRRERSRSAD 1440
WD40-rpts                                                                                      

Query     1441 RAHKSVKRYDDVVCAEDALEKANEEGCSIM 1470
WD40-rpts                                    

1 WD40-repeats found in QUERY=R06F6.8b (Len=1470):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    62-98       3.13  243.90  0.03169       10.0%     39.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-98     IDANFKETRGE---LKEIYWKPDSTSIAVTTNQCKILIYN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD