Input parameters:

  Query = R01H10.3d (Len=495)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R01H10.3d, Len=495):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEITWDSLFCDVNPKFIAFINRGAGGPFMVIPVNKIGRVDKDYPFVDAHKA 80  
WD40-rpts                                                                               (______

Query       81 PCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAWHPVANNVLLTAGGENVMFMWNVG 160 
WD40-rpts      _________WD 1______________)          (_________________WD 2_________________)  

Query      161 TGEALLEISGHPDQIWSINFNFDGSQFVTTCKDKKIRILDSHTGEVVHEGMGHEGVKPQRAIFVKDGLILSTGFTKRSER 240 
WD40-rpts       (_________________WD 3________________)   (_________________WD 4_______________

Query      241 LYALRAPEDLSTPIVEEELDTSNGVVFPFYDEDSGLVYLVGKGDCAIRYYEVNNDAPYVHYINTYTTNEPQRAVGFQSKR 320 
WD40-rpts      __) (_____________________WD 5____________________) (__________________WD 6_____

Query      321 GMSSEENEINRIYKLTTKGVVDILQFFVPRKSDLFQHDLYPDTRSTIPALTAEEFMEGKNAAPNRQPVNAAAAAAAAKPK 400 
WD40-rpts      _____________)                                                                  

Query      401 VQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRTEIPPK 480 
WD40-rpts                                                                                      

Query      481 EESKVDPMKPMRTTL 495 
WD40-rpts                     

6 WD40-repeats found in QUERY=R01H10.3d (Len=495):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    74-108      6.80  395.44  0.00029       30.0%     47.65
  WD 2:  Seg  9   119-158      6.80  395.43  0.00029       20.0%     52.92
  WD 3:  Seg 13   162-200      9.53  508.18  8.8e-06       35.0%     56.82
  WD 4:  Seg 17   204-243      5.45  339.68  0.00164       22.5%     54.99
  WD 5:  Seg 21   245-291      5.31  334.02  0.00196       15.0%     50.44
  WD 6:  Seg 25   293-334      5.50  341.82  0.00154       12.5%     38.13

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   74-108    ---------------FVDAHKA-PCLEVAWSPFNDNVIASCSEDTTCKVWV
   WD 2  119-158    -SE-------P--AVELTGHQK-RVNTIAWHPVANNVLLTAGGENVMFMWN
   WD 3  162-200    -GE-------A--LLEISGHPD-QIWSINFNF-DGSQFVTTCKDKKIRILD
   WD 4  204-243    -GE-------V--VHEGMGHEGVKPQRAIFVK-DGLILSTGFTKRSERLYA
   WD 5  245-291    RAPEDLSTPIV--EEELDTSNG-VVFPFYDED-SGLVYLVGKGDCAIRYYE
   WD 6  293-334    NND-------APYVHYINTYTT-NEPQRAVGF-QSKRGMSSEENEINRIYK

   WD40 Template    TGE-------C--LRTLSGHTS-GVTSVSFSP-DGKRLVSGSEDGTIKVWD