Input parameters:

  Query = R01H10.3b (Len=538)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R01H10.3b, Len=538):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEITWDSLFCDVNPKFIAFINRGAGGPFMVIPVNKIGRVDKDYPFVDAHKA 80  
WD40-rpts                                                                   (__________________

Query       81 PCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAWHPVANNVLLTAGGENVMFMWNVG 160 
WD40-rpts      ___WD 1____________________)          (_________________WD 2_________________)  

Query      161 TGEALLEISGHPDQIWSINFNFDGSQFVTTCKDKKIRILDSHTGEVVHEGMGHEGVKPQRAIFVKDGLILSTGFTKRSER 240 
WD40-rpts       (_________________WD 3________________)   (_________________WD 4_______________

Query      241 LYALRAPEDLSTPIVEEELDTSNGVVFPFYDEDSGLVYLVGKGDCAIRYYEVNNDAPYVHYINTYTTNEPQRAVGFQSKR 320 
WD40-rpts      __)(_____________________WD 5_____________________) (__________________WD 6_____

Query      321 GMSSEENEINRIYKLTTKGVVDILQFFVPRKSDLFQHDLYPDTRSTIPALTAEEFMEGKNAAPNRQPVNAAAAAAAAKPK 400 
WD40-rpts      _____________)                                                                  

Query      401 VQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRTEIPPK 480 
WD40-rpts                                                                                      

Query      481 EESKVDPMKPKQAHVPQNMDELLEDLMKMKAVLRQHERRIRMLEEEIADRNMSNAYSF 538 
WD40-rpts                                                                

6 WD40-repeats found in QUERY=R01H10.3b (Len=538):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    62-108      7.19  411.46  0.00018       32.5%     47.50
  WD 2:  Seg 10   119-158      6.80  395.50  0.00029       20.0%     52.13
  WD 3:  Seg 14   162-200      9.50  507.29  9.0e-06       35.0%     56.55
  WD 4:  Seg 18   204-243      5.61  346.31  0.00134       22.5%     55.26
  WD 5:  Seg 22   244-291      5.39  337.15  0.00178       15.0%     50.09
  WD 6:  Seg 26   293-334      5.77  352.94  0.00109       12.5%     35.85

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-108    VNK--------I--GRVDKDYPFVDAHKA-PCLEVAWSPFNDNVIASCSEDTTCKVWV
   WD 2  119-158    -SE--------P--AV------ELTGHQK-RVNTIAWHPVANNVLLTAGGENVMFMWN
   WD 3  162-200    -GE--------A--LL------EISGHPD-QIWSINFNF-DGSQFVTTCKDKKIRILD
   WD 4  204-243    -GE--------V--VH------EGMGHEGVKPQRAIFVK-DGLILSTGFTKRSERLYA
   WD 5  244-291    LRAPEDLSTPIV--EE------ELDTSNG-VVFPFYDED-SGLVYLVGKGDCAIRYYE
   WD 6  293-334    NND--------APYVH------YINTYTT-NEPQRAVGF-QSKRGMSSEENEINRIYK

   WD40 Template    TGE--------C--LR------TLSGHTS-GVTSVSFSP-DGKRLVSGSEDGTIKVWD