Input parameters:

  Query = MTCE.11 (Len=291)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (MTCE.11, Len=291):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MILVLLMVILMMIFIVQSIAFITLYERHLLGSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSEVSFLLVPGIS 80  
WD40-rpts                                           (__________________________________________

Query       81 FVVMYLEWFTLPYFFDFISFEYSVLFFLCLIGFSVYTTLISGIVSKSKYGMIGAIRASSQSISYEIAFSLYVLCIIIHNN 160 
WD40-rpts      _________________________________WD 1___________________________________________

Query      161 VFNFVSKFNLSLLIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLSSAMFFKFS 240 
WD40-rpts      ________________________________)                                               

Query      241 IFMAFSIFSLLIFIRSSYPRYRYDLMMSLFWFKLLPISLIMLCFYAVIFYY 291 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=MTCE.11 (Len=291):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    38-193      2.87  233.15  0.04398       20.0%     -11.28

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   38-193    GPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSEVSFLLVPGISFVVMYLEWFTLPYFFDFISFEYSVLFFLCLIGFSVYTTLISGIVSKSKYGMIGAIRASSQSISYEIAFSLYVLCIIIHNNVFNFVSKFNLSLLIIYIPFLIMVIAELNRAPFD

   WD40 Template    GECLRTLSGH------------TSGVTSVSF----------------------SPDGKRLVS------------------------GSED--------------------------------GTI---------------------------KVWD