Input parameters:

  Query = M05D6.9 (Len=271)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (M05D6.9, Len=271):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQLCLLTFFILILFSFLVESRIPRARYRKRGPTGFSLARIQKEYDEDYDSTDDSSTSRKSSVDGSRRRDEVVNDAKCLQK 80  
WD40-rpts      (____________________________________________________WD 1_______________________

Query       81 CNNQLNIGMDMVNAHMAFGSIDVPSVVEKRDLEMFCMLDYQHSQCIDECGYSVQFNLREYVCRNRFPEMLQHLPCYARAA 160 
WD40-rpts      ____________________________)                                                   

Query      161 PALIRHCRPRCGGYKALVHTQDGYSQRCRQLLCDHTCSTYILKRLCPEETGIAAANYLLEFTRLQVDYWMKDFTKQAKSR 240 
WD40-rpts                                                                                      

Query      241 VPLTCRKVQCKDFKLANCRTQKRYRKRVVDN 271 
WD40-rpts                                     

1 WD40-repeats found in QUERY=M05D6.9 (Len=271):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-109      3.19  246.34  0.02941       30.0%      1.75

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-109    MQLCLLTFFILILFSFLVESRIPRARYRKRGPTGFSLARIQKEYDEDYDSTDDSSTSRKSSVDGSRRRDEVVNDAKCLQKCNNQLNIGMDMVNAHMAFGSIDVPSVVEK

   WD40 Template    TG------------------ECLR------TLSGH----------------TSGVTSVSFSPDGKRL-------------------V----------SGSEDGTIKVWD