Input parameters:

  Query = M01A10.2d (Len=1058)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (M01A10.2d, Len=1058):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRILVVRHGLPEDPRCFAYDPVQRLIAIGTGRGHIRIIGDAGVDYLLKHESGEPVLHMQFLVNEGGLITSCGTDSIHLWN 80  
WD40-rpts      (_________________WD 1________________)  (_________________WD 2________________)

Query       81 YRQKTAEIVHTVQLSKESVSCIHLPVAGKWLFIGTDKGNVYFLCLNSFLLSPYVINWNKAIDLSCRVHPGPVRQLAVSPA 160 
WD40-rpts           (_________________WD 3________________)              (_________________WD 4

Query      161 ENTKLLIVYDKGIVVQWNLGTREVDRYPLDPPIKSVNWHFDGRQILTGNVDGSISLYNHKKSTEAIQRTTPHGSGPCRPI 240 
WD40-rpts      _________________)(_________________WD 5_________________)                      

Query      241 QQVEWKHMSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFM 320 
WD40-rpts                                                   (_________________WD 6_____________

Query      321 VLDLNQNGHPVIESPHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQELVVTG 400 
WD40-rpts      ____)                                        (____________________WD 7__________

Query      401 HKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVKYIELCLESRQLLVAGISGQVTLFRFTKQVSVIRVF 480 
WD40-rpts      _________)                                        (___________________WD 8______

Query      481 QIDEFENDDTLIYNTDTGNYTLRSTRNSLTPSSNGFLHPGEMPTRPKSAANSSNKSGGMMGLFRRNTAELAATIRERYQG 560 
WD40-rpts      _____________)                                                                  

Query      561 NRSESATTDRPDVEHRGETPPPTPNEGNKVQKAGRSHSVKGSFIRRFAKSSSSKEKKEVKIEVDNQSNSGIERSRSFHSH 640 
WD40-rpts                                                                                      

Query      641 ISEEGDSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWVGTSAGASLALNLILP 720 
WD40-rpts                                                                                      

Query      721 EDRFTSTIVVAPSGTVVRLKGQVISQSFMDNTFCIISPASESYKEAAKEQSATSPDRSLLNRVNTKASLAPQYSSSIDSN 800 
WD40-rpts                                                                                      

Query      801 DEISQILIVAAENEVKVVALPTFSQLYVQKFDEIPLVKATPTHIRGYPCLMCLSAAGQIIMLSLPSLRILQTSTIFPHSV 880 
WD40-rpts                                                                                      

Query      881 EIDDPLCQKTAFSDHGLGVYMASQTEMEKYTMCSEIAEQTGESLGELFVPCEMPEQPKNNSFLKGVSSIFGGTPRNDPND 960 
WD40-rpts                                                                                      

Query      961 IDAILSENMGVKNSSGVNPMRSVARTIPGPSVQMDRAQAGGVSAGQAAAMALQNLNERTEKLNATVDATENLKNNAMSLS 1040
WD40-rpts                                                                                      

Query     1041 SRTGKLVEKYEKKKWYNF 1058
WD40-rpts                        

8 WD40-repeats found in QUERY=M01A10.2d (Len=1058):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       5.51  342.18  0.00152       15.0%     51.63
  WD 2:  Seg  5    42-80       5.55  344.02  0.00144       15.0%     57.58
  WD 3:  Seg  9    86-124      5.88  357.38  0.00095       20.0%     56.58
  WD 4:  Seg 13   139-178      4.62  305.54  0.00474       17.5%     48.56
  WD 5:  Seg 16   179-218      7.05  405.96  0.00021       22.5%     52.82
  WD 6:  Seg 25   286-325      2.79  229.83  0.04863        5.0%     20.14
  WD 7:  Seg 30   366-410      4.80  312.77  0.00379       22.5%     26.36
  WD 8:  Seg 34   451-494      3.11  243.11  0.03247       12.5%     35.61

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -M-----RILVVRHGLPEDPRCFAYDP-VQRLIAIGT----GRGHIRIIG
   WD 2   42-80     -G-----VDYLLKHESGEPVLHMQFLV-NEGGLITSC----GTDSIHLWN
   WD 3   86-124    -A-----EIVHTVQLSKESVSCIHLPV-AGKWLFIGT----DKGNVYFLC
   WD 4  139-178    -K-----AIDLSCRVHPGPVRQLAVSPAENTKLLIVY----DKGIVVQWN
   WD 5  179-218    LG-----TREVDRYPLDPPIKSVNWHF-DGRQILTGN----VDGSISLYN
   WD 6  286-325    MD-----WPIIQFIPLNQNIWNSIPQC-PHSVAVLLK----HDFMVLDLN
   WD 7  366-410    GTKQRNKEFSARSWPVTGGLGRECATG-HQELVVTGH----KDGSLKFWQ
   WD 8  451-494    LE-----SRQLLVAGISGQVTLFRFTK-QVSVIRVFQIDEFENDDTLIYN

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSP-DGKRLVSGS----EDGTIKVWD