Input parameters:

  Query = M01A10.2a (Len=1124)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (M01A10.2a, Len=1124):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRAKKKFASAIDGLRSLHNRTEINVDEKIQSEHCRFTRVVRHGLPEDPRCFAYDPVQRLIAIGTGRGHIRIIGDAGVDY 80  
WD40-rpts                                   (____________________WD 1___________________)  (___

Query       81 LLKHESGEPVLHMQFLVNEGGLITSCGTDSIHLWNYRQKTAEIVHTVQLSKESVSCIHLPVAGKWLFIGTDKGNVYFLCL 160 
WD40-rpts      ______________WD 2________________)     (_________________WD 3________________) 

Query      161 NSFLLSPYVINWNKAIDLSCRVHPGPVRQLAVSPAENTKLLIVYDKGIVVQWNLGTREVDRYPLDPPIKSVNWHFDGRQI 240 
WD40-rpts                   (_________________WD 4_________________)(_________________WD 5_____

Query      241 LTGNVDGSISLYNHKKSTEAIQRTTPHGSGPCRPIQQVEWKHMSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLE 320 
WD40-rpts      ____________)                                                                   

Query      321 MDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQNGHPVIESPHAMNIHESPVTCMAYYSDCPLDLIGALTLV 400 
WD40-rpts      (_________________WD 6_________________)                                        

Query      401 GTKQRNKEFSARSWPVTGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 480 
WD40-rpts       (___________________WD 7___________________)             (____________________W

Query      481 YIELCLESRQLLVAGISGQVTLFRFTKQEICGTIAVVNIPLLGNLSSNLPNNDFDKSPVPNGPGKEIRRQRKIVSRESTN 560 
WD40-rpts      D 8____________________)                                                        

Query      561 SLDTSDSGDERIVPFKVRGAPVKRPPGFVPELACFVPWHSHAKVDQITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 640 
WD40-rpts                                                                                      

Query      641 WTTNELYGSDPTPAIQLSMQLSDAASPLESPISLEAPKRIISEQKQRSFDARRPQLFKTQSVVENGSLSRGDSQRESPSS 720 
WD40-rpts                                                                                      

Query      721 GRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWVGTSAGASLALNLILPEDRFTSTIVVAPSG 800 
WD40-rpts                                                                                      

Query      801 TVVRLKGQVISQSFMDNTFCIISPASESYKEAAKEQSATSPDRSLLNRVNTKASLAPQYSSSIDSNDEISQILIVAAENE 880 
WD40-rpts                                                                                      

Query      881 VKVVALPTFSQLYVQKFDEIPLVKATPTHIRGYPCLMCLSAAGQIIMLSLPSLRILQTSTIFPHSVEIDDPLCQKTAFSD 960 
WD40-rpts                                                                                      

Query      961 HGLGVYMASQTEMEKYTMCSEIAEQTGESLGELFVPCEMPEQPKNNSFLKGVSSIFGGTPRNDPNDIDAILSENMGVKNS 1040
WD40-rpts                                                                                      

Query     1041 SGVNPMRSVARTIPGPSVQMDRAQAGGVSAGQAAAMALQNLNERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKK 1120
WD40-rpts                                                                                      

Query     1121 WYNF 1124
WD40-rpts          

8 WD40-repeats found in QUERY=M01A10.2a (Len=1124):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    30-74       4.63  306.01  0.00467       12.5%     48.05
  WD 2:  Seg  5    77-115      5.53  343.00  0.00148       15.0%     58.01
  WD 3:  Seg  9   121-159      5.74  351.96  0.00112       20.0%     57.66
  WD 4:  Seg 13   174-213      4.33  293.44  0.00689       17.5%     48.31
  WD 5:  Seg 16   214-253      6.62  388.23  0.00036       22.5%     52.54
  WD 6:  Seg 25   321-360      2.79  229.80  0.04867        5.0%     20.47
  WD 7:  Seg 30   402-445      5.03  322.48  0.00280       25.0%     26.58
  WD 8:  Seg 33   459-504      3.24  248.50  0.02754       12.5%     42.51

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-74     IQ------SEHCRFTRVVRHGL----PEDPRCFAYDP-VQRLIAIGTGRGHIRIIG
   WD 2   77-115    -G------V-----DYLLKHES----GEPVLHMQFLV-NEGGLITSCGTDSIHLWN
   WD 3  121-159    -A------E-----IVHTVQLS----KESVSCIHLPV-AGKWLFIGTDKGNVYFLC
   WD 4  174-213    -K------A-----IDLSCRVH----PGPVRQLAVSPAENTKLLIVYDKGIVVQWN
   WD 5  214-253    LG------T-----REVDRYPL----DPPIKSVNWHF-DGRQILTGNVDGSISLYN
   WD 6  321-360    MD------W-----PIIQFIPL----NQNIWNSIPQC-PHSVAVLLKHDFMVLDLN
   WD 7  402-445    TK------Q-----RNKEFSARSWPVTGGLGRECATG-HQELVVTGHKDGSLKFWQ
   WD 8  459-504    SSSHFERLE-----EMETSDKV----SHAVKYIELCL-ESRQLLVAGISGQVTLFR

   WD40 Template    TG------E-----CLRTLSGH----TSGVTSVSFSP-DGKRLVSGSEDGTIKVWD